Variant report

Variant	rs722258
Chromosome Location	chr10:23369421-23369422
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11593017	0.82[ASN][1000 genomes]
rs11817587	0.93[CHB][hapmap];0.85[JPT][hapmap];0.91[ASN][1000 genomes]
rs12413082	0.93[CHB][hapmap];0.81[JPT][hapmap];0.90[ASN][1000 genomes]
rs1555800	0.80[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs1555801	0.84[ASN][1000 genomes]
rs1555805	0.87[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs16923014	0.85[JPT][hapmap]
rs1975958	0.87[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs1975959	0.83[ASN][1000 genomes]
rs2147940	0.81[CHB][hapmap];0.80[JPT][hapmap]
rs2147945	0.91[ASN][1000 genomes]
rs2296467	0.85[JPT][hapmap]
rs2886428	0.93[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs55656603	0.84[ASN][1000 genomes]
rs56201167	0.86[ASN][1000 genomes]
rs61849886	0.82[ASN][1000 genomes]
rs6482253	0.81[CHB][hapmap];0.80[JPT][hapmap]
rs7084426	0.86[ASN][1000 genomes]
rs7919629	0.81[CHB][hapmap]

Variant related diseases (count:1)

Disease	PMID	Source
Sleep time	23728906	GWAS catalog

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23359000-23369600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:23366400-23370000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr10:23366400-23370200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr10:23366400-23383600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr10:23368600-23369600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr10:23368600-23370000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr10:23368600-23371200	Enhancers	Fetal Muscle Leg	muscle
8	chr10:23368800-23370000	Enhancers	Hela-S3	cervix
9	chr10:23368800-23370200	Weak transcription	Brain Germinal Matrix	brain
10	chr10:23369000-23370000	Weak transcription	Psoas Muscle	Psoas
11	chr10:23369200-23370200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr10:23369200-23370400	Enhancers	Fetal Kidney	kidney
13	chr10:23369200-23370600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr10:23369200-23371200	Enhancers	Fetal Stomach	stomach
15	chr10:23369200-23383800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr10:23369400-23369800	Weak transcription	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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