Variant report

Variant	rs2886428
Chromosome Location	chr10:23383522-23383523
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAZ	chr10:23383516-23385526	IMR90	lung:	n/a	chr10:23384789-23384799

No.	Distal block	Cell Line	Cell type
1	chr10:23375345..23377248-chr10:23381230..23384056,2	K562	blood:
2	chr10:23383379..23389769-chr10:23391490..23396055,9	K562	blood:
3	chr10:23383379..23389460-chr10:23391589..23395775,7	K562	blood:

Variant related genes	Relation type
MSRB2	TF binding region
ENSG00000148450	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11593017	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11817587	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12413082	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1555800	0.86[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs1555801	0.94[ASN][1000 genomes]
rs1555805	0.84[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16923014	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1975958	0.93[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1975959	0.94[ASN][1000 genomes]
rs2147940	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2147945	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2274259	0.85[ASN][1000 genomes]
rs2296467	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs3793757	0.86[ASN][1000 genomes]
rs55656603	0.94[ASN][1000 genomes]
rs56201167	0.97[ASN][1000 genomes]
rs61849887	0.87[ASN][1000 genomes]
rs61849888	0.88[ASN][1000 genomes]
rs61849889	0.90[ASN][1000 genomes]
rs6482253	0.92[CEU][hapmap];0.87[CHB][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7084426	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs722258	0.93[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs7919629	1.00[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23366400-23383600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:23369200-23383800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr10:23371000-23383800	Weak transcription	Fetal Heart	heart
4	chr10:23383400-23383600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
5	chr10:23383400-23383600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr10:23383400-23383600	Enhancers	Brain Anterior Caudate	brain
7	chr10:23383400-23383600	Active TSS	Brain Cingulate Gyrus	brain
8	chr10:23383400-23383600	Active TSS	Brain Hippocampus Middle	brain
9	chr10:23383400-23383600	Flanking Active TSS	NHDF-Ad	bronchial
10	chr10:23383400-23383800	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr10:23383400-23383800	Flanking Active TSS	Colon Smooth Muscle	Colon
12	chr10:23383400-23384000	Enhancers	H9 Cell Line	embryonic stem cell
13	chr10:23383400-23384000	Enhancers	Hela-S3	cervix
14	chr10:23383400-23385200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr10:23383400-23386400	Active TSS	Duodenum Smooth Muscle	Duodenum

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