Variant report

Variant	rs2274259
Chromosome Location	chr10:23384960-23384961
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:23383379..23389769-chr10:23391490..23396055,9	K562	blood:
2	chr10:23362935..23364765-chr10:23383758..23385260,2	K562	blood:
3	chr10:23381002..23382759-chr10:23384583..23386514,2	MCF-7	breast:
4	chr10:23384510..23386607-chr10:23394360..23397420,4	MCF-7	breast:
5	chr10:23384382..23387002-chr10:23390906..23394349,4	MCF-7	breast:
6	chr10:23383560..23385979-chr10:23407851..23409432,2	K562	blood:
7	chr10:23383379..23389460-chr10:23391589..23395775,7	K562	blood:

Variant related genes	Relation type
ENSG00000221221	Chromatin interaction
ENSG00000148450	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11817587	0.81[ASN][1000 genomes]
rs12413082	0.82[ASN][1000 genomes]
rs1555800	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1555801	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1555805	0.88[ASN][1000 genomes]
rs16923014	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1975958	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1975959	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2147945	0.81[ASN][1000 genomes]
rs2296467	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2886428	0.85[ASN][1000 genomes]
rs3793756	0.88[EUR][1000 genomes]
rs3793757	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55656603	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56201167	0.80[AFR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59658981	0.88[EUR][1000 genomes]
rs61244168	0.88[EUR][1000 genomes]
rs61849887	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61849888	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61849889	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7084426	0.82[ASN][1000 genomes]
rs7094224	0.88[EUR][1000 genomes]
rs7094823	0.88[EUR][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23383400-23385200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr10:23383400-23386400	Active TSS	Duodenum Smooth Muscle	Duodenum
3	chr10:23383600-23385000	Active TSS	Stomach Smooth Muscle	stomach
4	chr10:23383600-23385200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr10:23383600-23385200	Active TSS	Brain Inferior Temporal Lobe	brain
6	chr10:23383600-23385200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr10:23383600-23385200	Active TSS	Duodenum Mucosa	Duodenum
8	chr10:23383600-23385200	Active TSS	Osteobl	bone
9	chr10:23383600-23385400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr10:23383600-23385400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr10:23383600-23385400	Active TSS	Pancreatic Islets	Pancreatic Islet
12	chr10:23383600-23385400	Active TSS	NHDF-Ad	bronchial
13	chr10:23383600-23385600	Active TSS	Breast Myoepithelial Primary Cells	Breast
14	chr10:23383600-23385600	Active TSS	Brain Angular Gyrus	brain
15	chr10:23383600-23385600	Active TSS	Right Atrium	heart
16	chr10:23383600-23385800	Active TSS	Aorta	Aorta
17	chr10:23383800-23385000	Active TSS	Primary T helper cells fromperipheralblood	blood
18	chr10:23383800-23385000	Enhancers	Fetal Brain Male	brain
19	chr10:23383800-23385200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr10:23383800-23385200	Active TSS	Primary T cells from cord blood	blood
21	chr10:23383800-23385200	Active TSS	Primary T helper cells PMA-I stimulated	--
22	chr10:23383800-23385200	Active TSS	Fetal Adrenal Gland	Adrenal Gland
23	chr10:23383800-23385200	Active TSS	Fetal Brain Female	brain
24	chr10:23383800-23385200	Active TSS	Fetal Lung	lung
25	chr10:23383800-23385200	Active TSS	Rectal Mucosa Donor 29	rectum
26	chr10:23383800-23385200	Active TSS	Rectal Mucosa Donor 31	rectum
27	chr10:23383800-23385200	Active TSS	NH-A	brain
28	chr10:23383800-23385400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr10:23383800-23385400	Active TSS	Muscle Satellite Cultured Cells	--
30	chr10:23383800-23385400	Active TSS	Brain Substantia Nigra	brain
31	chr10:23383800-23385400	Active TSS	Colon Smooth Muscle	Colon
32	chr10:23383800-23385400	Active TSS	Ovary	ovary
33	chr10:23383800-23385400	Active TSS	Rectal Smooth Muscle	rectum
34	chr10:23383800-23385400	Active TSS	Skeletal Muscle Female	skeletal muscle
35	chr10:23383800-23385400	Active TSS	HSMMtube	muscle
36	chr10:23383800-23385400	Active TSS	NHEK	skin
37	chr10:23383800-23385600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr10:23383800-23385600	Active TSS	Colonic Mucosa	Colon
39	chr10:23383800-23385600	Active TSS	Psoas Muscle	Psoas
40	chr10:23383800-23385600	Active TSS	Right Ventricle	heart
41	chr10:23383800-23385600	Active TSS	HSMM	muscle
42	chr10:23383800-23385600	Active TSS	NHLF	lung
43	chr10:23383800-23385800	Active TSS	Brain Germinal Matrix	brain
44	chr10:23384000-23385000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
45	chr10:23384000-23385000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr10:23384000-23385200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr10:23384000-23385200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr10:23384000-23385200	Active TSS	Primary T helper naive cells fromperipheralblood	blood
49	chr10:23384000-23385200	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
50	chr10:23384000-23385200	Active TSS	Primary T killer memory cells from peripheral blood	blood

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