Variant report

Variant	rs3793757
Chromosome Location	chr10:23386155-23386156
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:23343262..23345013-chr10:23385017..23389962,4	K562	blood:
2	chr10:23383379..23389769-chr10:23391490..23396055,9	K562	blood:
3	chr10:23375787..23377913-chr10:23385047..23387956,2	MCF-7	breast:
4	chr10:23381002..23382759-chr10:23384583..23386514,2	MCF-7	breast:
5	chr10:23384510..23386607-chr10:23394360..23397420,4	MCF-7	breast:
6	chr10:23384382..23387002-chr10:23390906..23394349,4	MCF-7	breast:
7	chr10:23386053..23388317-chr10:23404216..23407147,2	K562	blood:
8	chr10:23385255..23386926-chr10:23401096..23404039,2	K562	blood:
9	chr10:23383379..23389460-chr10:23391589..23395775,7	K562	blood:

No data

Variant related genes	Relation type
ENSG00000148450	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11817587	0.82[ASN][1000 genomes]
rs12413082	0.82[ASN][1000 genomes]
rs1555800	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1555801	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1555804	0.86[AFR][1000 genomes]
rs1555805	0.88[ASN][1000 genomes]
rs16923014	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1975958	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1975959	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2147940	0.95[ASN][1000 genomes]
rs2147945	0.82[ASN][1000 genomes]
rs2274259	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2296467	0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2886428	0.86[ASN][1000 genomes]
rs3793756	0.99[EUR][1000 genomes]
rs55656603	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56201167	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59658981	0.99[EUR][1000 genomes]
rs61244168	0.99[EUR][1000 genomes]
rs61849886	0.87[EUR][1000 genomes]
rs61849887	0.99[EUR][1000 genomes]
rs61849888	0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61849889	0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6482253	0.91[ASN][1000 genomes]
rs7084426	0.83[ASN][1000 genomes]
rs7094224	0.99[EUR][1000 genomes]
rs7094823	0.98[EUR][1000 genomes]
rs7916862	0.83[AFR][1000 genomes]
rs7919629	0.96[ASN][1000 genomes]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23383400-23386400	Active TSS	Duodenum Smooth Muscle	Duodenum
2	chr10:23384000-23386200	Active TSS	Sigmoid Colon	Sigmoid Colon
3	chr10:23384200-23386400	Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chr10:23384600-23386200	Flanking Active TSS	Primary hematopoietic stem cells	blood
5	chr10:23384800-23386600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:23385000-23386600	Flanking Active TSS	Stomach Smooth Muscle	stomach
7	chr10:23385200-23386200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr10:23385200-23386200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
9	chr10:23385200-23386200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
10	chr10:23385200-23386200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
11	chr10:23385200-23386200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
12	chr10:23385200-23386200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr10:23385200-23386200	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
14	chr10:23385200-23386200	Flanking Active TSS	HMEC	breast
15	chr10:23385200-23386200	Flanking Active TSS	K562	blood
16	chr10:23385200-23386400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
17	chr10:23385200-23386400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
18	chr10:23385200-23386400	Flanking Active TSS	Fetal Lung	lung
19	chr10:23385200-23386400	Flanking Active TSS	Dnd41	blood
20	chr10:23385200-23386400	Flanking Active TSS	Osteobl	bone
21	chr10:23385200-23386600	Flanking Active TSS	Primary T cells from cord blood	blood
22	chr10:23385200-23386600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
23	chr10:23385200-23386600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
24	chr10:23385400-23386200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr10:23385400-23386200	Flanking Active TSS	Brain Hippocampus Middle	brain
26	chr10:23385400-23386200	Flanking Active TSS	NHDF-Ad	bronchial
27	chr10:23385400-23386400	Enhancers	Primary B cells from peripheral blood	blood
28	chr10:23385400-23386400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
29	chr10:23385400-23386400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr10:23385400-23386400	Flanking Active TSS	Colon Smooth Muscle	Colon
31	chr10:23385400-23386400	Enhancers	Ovary	ovary
32	chr10:23385400-23386400	Flanking Active TSS	NHEK	skin
33	chr10:23385600-23386200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
34	chr10:23385600-23386200	Enhancers	Cortex derived primary cultured neurospheres	brain
35	chr10:23385600-23386200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
36	chr10:23385600-23386200	Flanking Active TSS	Fetal Intestine Large	intestine
37	chr10:23385600-23386200	Active TSS	Fetal Muscle Trunk	muscle
38	chr10:23385600-23386200	Flanking Active TSS	Right Atrium	heart
39	chr10:23385600-23386400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr10:23385600-23386400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
41	chr10:23385600-23386400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
42	chr10:23385600-23386400	Flanking Active TSS	Fetal Kidney	kidney
43	chr10:23385600-23386400	Enhancers	Placenta	Placenta
44	chr10:23385600-23386400	Enhancers	Pancreas	Pancrea
45	chr10:23385600-23386400	Enhancers	Stomach Mucosa	stomach
46	chr10:23385600-23386400	Flanking Active TSS	GM12878-XiMat	blood
47	chr10:23385600-23386600	Enhancers	H9 Cell Line	embryonic stem cell
48	chr10:23385600-23386600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr10:23385600-23386600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
50	chr10:23385600-23386600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin

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