Variant report

Variant	rs12413082
Chromosome Location	chr10:23381422-23381423
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:23380532..23382053-chr10:23391842..23394061,2	MCF-7	breast:
2	chr10:23373278..23374905-chr10:23380457..23382276,2	K562	blood:
3	chr10:23375345..23377248-chr10:23381230..23384056,2	K562	blood:
4	chr10:23343369..23345773-chr10:23378889..23381987,3	K562	blood:
5	chr10:23381002..23382759-chr10:23384583..23386514,2	MCF-7	breast:
6	chr10:23341115..23345773-chr10:23377859..23381987,5	K562	blood:

Variant related genes	Relation type
ENSG00000148450	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11593017	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11817587	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[YRI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1555800	0.86[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs1555801	0.90[ASN][1000 genomes]
rs1555805	0.94[ASW][hapmap];0.96[CEU][hapmap];0.93[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16923014	0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs1975958	0.93[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs1975959	0.90[ASN][1000 genomes]
rs2147940	0.96[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2147945	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2274259	0.82[ASN][1000 genomes]
rs2296467	0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs2886428	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3793757	0.82[ASN][1000 genomes]
rs55656603	0.90[ASN][1000 genomes]
rs56201167	0.93[ASN][1000 genomes]
rs61849886	0.81[ASN][1000 genomes]
rs61849887	0.82[ASN][1000 genomes]
rs61849888	0.84[ASN][1000 genomes]
rs61849889	0.86[ASN][1000 genomes]
rs6482253	0.88[CEU][hapmap];0.87[CHB][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];0.81[MKK][hapmap];0.98[TSI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7084426	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs722258	0.93[CHB][hapmap];0.81[JPT][hapmap];0.90[ASN][1000 genomes]
rs7919629	0.96[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23366400-23383600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:23369200-23383800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr10:23371000-23383800	Weak transcription	Fetal Heart	heart
4	chr10:23378600-23383400	Weak transcription	Hela-S3	cervix

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