Variant report

Variant	rs56201167
Chromosome Location	chr10:23384152-23384153
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SP1	chr10:23384064-23384662	H1-hESC	embryonic stem cell:	n/a	chr10:23384293-23384302 chr10:23384381-23384392 chr10:23384294-23384303 chr10:23384292-23384304 chr10:23384294-23384303 chr10:23384343-23384354 chr10:23384326-23384337 chr10:23384355-23384366 chr10:23384366-23384377
2	BHLHE40	chr10:23383872-23384669	K562	blood:	n/a	n/a
3	EGR1	chr10:23384105-23384605	H1-hESC	embryonic stem cell:	n/a	chr10:23384378-23384392 chr10:23384363-23384377
4	RCOR1	chr10:23383882-23384738	K562	blood:	n/a	n/a
5	CREB1	chr10:23384115-23384759	A549	lung:	n/a	n/a
6	EGR1	chr10:23384030-23384730	K562	blood:	n/a	chr10:23384378-23384392 chr10:23384676-23384686 chr10:23384363-23384377
7	RCOR1	chr10:23384132-23384211	K562	blood:	n/a	n/a
8	REST	chr10:23383698-23384159	H1-neurons	neurons:	n/a	chr10:23384142-23384155
9	CHD2	chr10:23384028-23384568	H1-hESC	embryonic stem cell:	n/a	n/a
10	SPI1	chr10:23384127-23384301	K562	blood:	n/a	chr10:23384141-23384154
11	MAZ	chr10:23383965-23385353	K562	blood:	n/a	chr10:23384789-23384799
12	MYC	chr10:23383901-23385107	K562	blood:	n/a	chr10:23384789-23384799
13	TCF12	chr10:23384034-23384824	A549	lung:	n/a	n/a
14	MAX	chr10:23384129-23384743	MCF-7	breast:	n/a	n/a
15	POLR2A	chr10:23383642-23384943	K562	blood:	n/a	n/a
16	EGR1	chr10:23384131-23384725	MCF-7	breast:	n/a	chr10:23384378-23384392 chr10:23384676-23384686 chr10:23384363-23384377
17	EP300	chr10:23383773-23384169	SK-N-SH_RA	brain:	n/a	n/a
18	BACH1	chr10:23383947-23384199	H1-hESC	embryonic stem cell:	n/a	n/a
19	CEBPD	chr10:23384135-23384803	HepG2	liver:	n/a	n/a
20	ZBTB7A	chr10:23384095-23385143	K562	blood:	n/a	n/a
21	SP1	chr10:23384093-23384645	A549	lung:	n/a	chr10:23384293-23384302 chr10:23384381-23384392 chr10:23384294-23384303 chr10:23384292-23384304 chr10:23384294-23384303 chr10:23384343-23384354 chr10:23384326-23384337 chr10:23384355-23384366 chr10:23384366-23384377
22	SP4	chr10:23384128-23384589	H1-hESC	embryonic stem cell:	n/a	chr10:23384381-23384392 chr10:23384343-23384354 chr10:23384326-23384337 chr10:23384355-23384366 chr10:23384366-23384377
23	CHD2	chr10:23384101-23384944	Hela-S3	cervix:	n/a	chr10:23384786-23384796 chr10:23384783-23384793
24	POLR2A	chr10:23383846-23384793	HUVEC	blood vessel:	n/a	n/a
25	TBL1XR1	chr10:23383971-23384782	K562	blood:	n/a	n/a
26	MAZ	chr10:23384069-23384743	HepG2	liver:	n/a	n/a
27	EGR1	chr10:23384100-23384576	K562	blood:	n/a	chr10:23384378-23384392 chr10:23384363-23384377
28	IRF1	chr10:23383975-23384677	K562	blood:	n/a	chr10:23384292-23384306
29	ZNF143	chr10:23383883-23384586	K562	blood:	n/a	n/a
30	CHD2	chr10:23384120-23384989	GM12878	blood:	n/a	chr10:23384786-23384796 chr10:23384783-23384793
31	ELF1	chr10:23384144-23385215	GM12878	blood:	n/a	chr10:23384676-23384688 chr10:23384680-23384689
32	POLR2A	chr10:23384033-23385626	HepG2	liver:	n/a	n/a
33	ZNF263	chr10:23383978-23386607	HEK293-T-REx	kidney:	n/a	chr10:23384328-23384337 chr10:23384146-23384155
34	EP300	chr10:23383971-23384619	K562	blood:	n/a	n/a
35	MAX	chr10:23384057-23384916	H1-hESC	embryonic stem cell:	n/a	chr10:23384789-23384799
36	MAZ	chr10:23383815-23385610	GM12878	blood:	n/a	chr10:23384789-23384799
37	POLR2A	chr10:23383983-23384791	PFSK-1	brain:	n/a	n/a
38	MAZ	chr10:23383516-23385526	IMR90	lung:	n/a	chr10:23384789-23384799
39	MAZ	chr10:23384149-23384824	Hela-S3	cervix:	n/a	chr10:23384789-23384799
40	CHD2	chr10:23384140-23385474	K562	blood:	n/a	chr10:23384786-23384796 chr10:23384783-23384793
41	EGR1	chr10:23384070-23384670	HCT-116	colon:	n/a	chr10:23384378-23384392 chr10:23384363-23384377
42	HCFC1	chr10:23384144-23384774	K562	blood:	n/a	n/a
43	MAX	chr10:23384084-23384774	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:23383379..23389769-chr10:23391490..23396055,9	K562	blood:
2	chr10:23362935..23364765-chr10:23383758..23385260,2	K562	blood:
3	chr10:23383560..23385979-chr10:23407851..23409432,2	K562	blood:
4	chr10:23383379..23389460-chr10:23391589..23395775,7	K562	blood:

Variant related genes	Relation type
MSRB2	TF binding region
ENSG00000148450	Chromatin interaction
ENSG00000221221	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11593017	0.84[ASN][1000 genomes]
rs11817587	0.92[ASN][1000 genomes]
rs12413082	0.93[ASN][1000 genomes]
rs1555800	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1555801	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1555804	0.84[AFR][1000 genomes]
rs1555805	0.94[ASN][1000 genomes]
rs16923014	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1975958	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1975959	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2147940	0.84[ASN][1000 genomes]
rs2147945	0.92[ASN][1000 genomes]
rs2274259	0.80[AFR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2296467	0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2886428	0.97[ASN][1000 genomes]
rs3793756	0.99[EUR][1000 genomes]
rs3793757	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55656603	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59658981	0.99[EUR][1000 genomes]
rs61244168	0.99[EUR][1000 genomes]
rs61849886	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61849887	0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61849888	0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61849889	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6482253	0.81[ASN][1000 genomes]
rs7084426	0.93[ASN][1000 genomes]
rs7094224	0.99[EUR][1000 genomes]
rs7094823	0.98[EUR][1000 genomes]
rs722258	0.86[ASN][1000 genomes]
rs7919629	0.86[ASN][1000 genomes]

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23383400-23385200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr10:23383400-23386400	Active TSS	Duodenum Smooth Muscle	Duodenum
3	chr10:23383600-23384200	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:23383600-23384200	Flanking Active TSS	Brain Cingulate Gyrus	brain
5	chr10:23383600-23384200	Flanking Active TSS	Brain Hippocampus Middle	brain
6	chr10:23383600-23384600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr10:23383600-23385000	Active TSS	Stomach Smooth Muscle	stomach
8	chr10:23383600-23385200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr10:23383600-23385200	Active TSS	Brain Inferior Temporal Lobe	brain
10	chr10:23383600-23385200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
11	chr10:23383600-23385200	Active TSS	Duodenum Mucosa	Duodenum
12	chr10:23383600-23385200	Active TSS	Osteobl	bone
13	chr10:23383600-23385400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr10:23383600-23385400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr10:23383600-23385400	Active TSS	Pancreatic Islets	Pancreatic Islet
16	chr10:23383600-23385400	Active TSS	NHDF-Ad	bronchial
17	chr10:23383600-23385600	Active TSS	Breast Myoepithelial Primary Cells	Breast
18	chr10:23383600-23385600	Active TSS	Brain Angular Gyrus	brain
19	chr10:23383600-23385600	Active TSS	Right Atrium	heart
20	chr10:23383600-23385800	Active TSS	Aorta	Aorta
21	chr10:23383800-23384200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
22	chr10:23383800-23384200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
23	chr10:23383800-23384200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
24	chr10:23383800-23384200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
25	chr10:23383800-23384200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr10:23383800-23384200	Flanking Active TSS	Adipose Nuclei	Adipose
27	chr10:23383800-23384200	Flanking Active TSS	Fetal Heart	heart
28	chr10:23383800-23384200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
29	chr10:23383800-23384200	Flanking Active TSS	HepG2	liver
30	chr10:23383800-23384200	Flanking Active TSS	HMEC	breast
31	chr10:23383800-23384200	Flanking Active TSS	K562	blood
32	chr10:23383800-23384400	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr10:23383800-23385000	Active TSS	Primary T helper cells fromperipheralblood	blood
34	chr10:23383800-23385000	Enhancers	Fetal Brain Male	brain
35	chr10:23383800-23385200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr10:23383800-23385200	Active TSS	Primary T cells from cord blood	blood
37	chr10:23383800-23385200	Active TSS	Primary T helper cells PMA-I stimulated	--
38	chr10:23383800-23385200	Active TSS	Fetal Adrenal Gland	Adrenal Gland
39	chr10:23383800-23385200	Active TSS	Fetal Brain Female	brain
40	chr10:23383800-23385200	Active TSS	Fetal Lung	lung
41	chr10:23383800-23385200	Active TSS	Rectal Mucosa Donor 29	rectum
42	chr10:23383800-23385200	Active TSS	Rectal Mucosa Donor 31	rectum
43	chr10:23383800-23385200	Active TSS	NH-A	brain
44	chr10:23383800-23385400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr10:23383800-23385400	Active TSS	Muscle Satellite Cultured Cells	--
46	chr10:23383800-23385400	Active TSS	Brain Substantia Nigra	brain
47	chr10:23383800-23385400	Active TSS	Colon Smooth Muscle	Colon
48	chr10:23383800-23385400	Active TSS	Ovary	ovary
49	chr10:23383800-23385400	Active TSS	Rectal Smooth Muscle	rectum
50	chr10:23383800-23385400	Active TSS	Skeletal Muscle Female	skeletal muscle

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