Variant report

Variant	rs16923014
Chromosome Location	chr10:23388136-23388137
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:23384371-23389991	K562	blood:	n/a	n/a
2	CEBPB	chr10:23388095-23388428	HepG2	liver:	n/a	chr10:23388278-23388291 chr10:23388278-23388291 chr10:23388278-23388289
3	POLR2A	chr10:23387137-23388433	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:23343262..23345013-chr10:23385017..23389962,4	K562	blood:
2	chr10:23383379..23389769-chr10:23391490..23396055,9	K562	blood:
3	chr10:23388038..23390667-chr10:23391022..23394000,2	MCF-7	breast:
4	chr10:23387685..23389713-chr10:23399173..23400899,2	MCF-7	breast:
5	chr10:23386053..23388317-chr10:23404216..23407147,2	K562	blood:
6	chr10:23383379..23389460-chr10:23391589..23395775,7	K562	blood:

Variant related genes	Relation type
MSRB2	TF binding region
ENSG00000148450	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11593017	0.88[ASN][1000 genomes]
rs11817587	0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs12413082	0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs1555800	1.00[CEU][hapmap];0.95[JPT][hapmap];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1555801	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1555805	0.87[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1975958	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1975959	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2147940	0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs2147945	0.82[ASN][1000 genomes]
rs2274259	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2296467	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2886428	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs3793756	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3793757	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55656603	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56201167	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59658981	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61244168	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61849886	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61849887	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61849888	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61849889	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6482253	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs7084426	0.83[ASN][1000 genomes]
rs7094224	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7094823	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs722258	0.85[JPT][hapmap]
rs7919629	0.86[JPT][hapmap];0.82[ASN][1000 genomes]

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23385600-23390200	Enhancers	Small Intestine	intestine
2	chr10:23385800-23389200	Enhancers	Liver	Liver
3	chr10:23385800-23393200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr10:23385800-23393400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr10:23385800-23395600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:23385800-23401800	Weak transcription	Brain Germinal Matrix	brain
7	chr10:23385800-23409400	Weak transcription	NH-A	brain
8	chr10:23386000-23388200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr10:23386000-23388400	Enhancers	HepG2	liver
10	chr10:23386000-23388600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr10:23386000-23388600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr10:23386000-23388600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr10:23386000-23388600	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr10:23386000-23389200	Enhancers	Brain Substantia Nigra	brain
15	chr10:23386000-23393000	Weak transcription	HSMM	muscle
16	chr10:23386000-23393200	Weak transcription	Gastric	stomach
17	chr10:23386000-23393200	Weak transcription	Thymus	Thymus
18	chr10:23386000-23393200	Weak transcription	Spleen	Spleen
19	chr10:23386000-23412000	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr10:23386200-23388200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr10:23386200-23388200	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr10:23386200-23388600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr10:23386200-23388800	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr10:23386200-23393000	Weak transcription	Fetal Muscle Trunk	muscle
25	chr10:23386200-23393200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr10:23386200-23393200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr10:23386400-23388400	Weak transcription	HUVEC	blood vessel
28	chr10:23386400-23388800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr10:23386400-23388800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr10:23386400-23388800	Weak transcription	Fetal Kidney	kidney
31	chr10:23386400-23389600	Weak transcription	Primary hematopoietic stem cells	blood
32	chr10:23386400-23393000	Weak transcription	Esophagus	oesophagus
33	chr10:23386400-23393000	Weak transcription	Lung	lung
34	chr10:23386400-23393200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr10:23386400-23393200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr10:23386400-23393200	Weak transcription	Placenta	Placenta
37	chr10:23386400-23393200	Weak transcription	Right Ventricle	heart
38	chr10:23386400-23393400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr10:23386400-23393600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr10:23386400-23394600	Weak transcription	HSMMtube	muscle
41	chr10:23386400-23395400	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr10:23386400-23395600	Weak transcription	Pancreas	Pancrea
43	chr10:23386400-23409600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr10:23386400-23411200	Weak transcription	Primary B cells from peripheral blood	blood
45	chr10:23386400-23411200	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr10:23386600-23388200	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr10:23386600-23388400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr10:23386600-23388400	Weak transcription	Colonic Mucosa	Colon
49	chr10:23386600-23388400	Weak transcription	Fetal Intestine Small	intestine
50	chr10:23386600-23388400	Weak transcription	Right Atrium	heart

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