Variant report

Variant	rs1555801
Chromosome Location	chr10:23385710-23385711
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:23343262..23345013-chr10:23385017..23389962,4	K562	blood:
2	chr10:23383379..23389769-chr10:23391490..23396055,9	K562	blood:
3	chr10:23375787..23377913-chr10:23385047..23387956,2	MCF-7	breast:
4	chr10:23381002..23382759-chr10:23384583..23386514,2	MCF-7	breast:
5	chr10:23384510..23386607-chr10:23394360..23397420,4	MCF-7	breast:
6	chr10:23384382..23387002-chr10:23390906..23394349,4	MCF-7	breast:
7	chr10:23383560..23385979-chr10:23407851..23409432,2	K562	blood:
8	chr10:23385255..23386926-chr10:23401096..23404039,2	K562	blood:
9	chr10:23383379..23389460-chr10:23391589..23395775,7	K562	blood:

No data

Variant related genes	Relation type
ENSG00000148450	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11593017	0.82[ASN][1000 genomes]
rs11817587	0.90[ASN][1000 genomes]
rs12413082	0.90[ASN][1000 genomes]
rs1555800	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1555804	0.85[AFR][1000 genomes]
rs1555805	0.97[ASN][1000 genomes]
rs16923014	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1975958	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1975959	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2147940	0.87[ASN][1000 genomes]
rs2147945	0.90[ASN][1000 genomes]
rs2274259	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2296467	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2886428	0.94[ASN][1000 genomes]
rs3793756	0.99[EUR][1000 genomes]
rs3793757	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55656603	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56201167	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59658981	0.98[EUR][1000 genomes]
rs61244168	0.98[EUR][1000 genomes]
rs61849886	0.86[EUR][1000 genomes]
rs61849887	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61849888	0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61849889	0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6482253	0.83[ASN][1000 genomes]
rs7084426	0.91[ASN][1000 genomes]
rs7094224	0.98[EUR][1000 genomes]
rs7094823	0.97[EUR][1000 genomes]
rs722258	0.84[ASN][1000 genomes]
rs7919629	0.88[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23383400-23386400	Active TSS	Duodenum Smooth Muscle	Duodenum
2	chr10:23383600-23385800	Active TSS	Aorta	Aorta
3	chr10:23383800-23385800	Active TSS	Brain Germinal Matrix	brain
4	chr10:23384000-23385800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr10:23384000-23385800	Active TSS	Esophagus	oesophagus
6	chr10:23384000-23386200	Active TSS	Sigmoid Colon	Sigmoid Colon
7	chr10:23384200-23386400	Active TSS	iPS-15b Cell Line	embryonic stem cell
8	chr10:23384400-23385800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr10:23384400-23385800	Flanking Active TSS	Primary B cells from cord blood	blood
10	chr10:23384400-23386000	Active TSS	iPS-18 Cell Line	embryonic stem cell
11	chr10:23384600-23386200	Flanking Active TSS	Primary hematopoietic stem cells	blood
12	chr10:23384800-23386000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr10:23384800-23386600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr10:23385000-23385800	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr10:23385000-23386000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
16	chr10:23385000-23386000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
17	chr10:23385000-23386000	Flanking Active TSS	Fetal Brain Male	brain
18	chr10:23385000-23386000	Flanking Active TSS	Fetal Thymus	thymus
19	chr10:23385000-23386600	Flanking Active TSS	Stomach Smooth Muscle	stomach
20	chr10:23385200-23385800	Flanking Active TSS	H1 Cell Line	embryonic stem cell
21	chr10:23385200-23385800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
22	chr10:23385200-23385800	Flanking Active TSS	Liver	Liver
23	chr10:23385200-23385800	Flanking Active TSS	Fetal Muscle Leg	muscle
24	chr10:23385200-23385800	Flanking Active TSS	Thymus	Thymus
25	chr10:23385200-23385800	Flanking Active TSS	HUVEC	blood vessel
26	chr10:23385200-23385800	Flanking Active TSS	NH-A	brain
27	chr10:23385200-23386000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr10:23385200-23386000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
29	chr10:23385200-23386000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
30	chr10:23385200-23386000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
31	chr10:23385200-23386000	Flanking Active TSS	Adipose Nuclei	Adipose
32	chr10:23385200-23386000	Flanking Active TSS	Brain Anterior Caudate	brain
33	chr10:23385200-23386000	Flanking Active TSS	Brain Cingulate Gyrus	brain
34	chr10:23385200-23386000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
35	chr10:23385200-23386000	Flanking Active TSS	Duodenum Mucosa	Duodenum
36	chr10:23385200-23386000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
37	chr10:23385200-23386000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
38	chr10:23385200-23386000	Enhancers	Spleen	Spleen
39	chr10:23385200-23386200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr10:23385200-23386200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
41	chr10:23385200-23386200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
42	chr10:23385200-23386200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
43	chr10:23385200-23386200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
44	chr10:23385200-23386200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr10:23385200-23386200	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
46	chr10:23385200-23386200	Flanking Active TSS	HMEC	breast
47	chr10:23385200-23386200	Flanking Active TSS	K562	blood
48	chr10:23385200-23386400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
49	chr10:23385200-23386400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
50	chr10:23385200-23386400	Flanking Active TSS	Fetal Lung	lung

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