Variant report

Variant	rs6482253
Chromosome Location	chr10:23396191-23396192
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23384510..23386607-chr10:23394360..23397420,4	MCF-7	breast:
2	chr10:23390724..23393855-chr10:23394001..23396566,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000148450	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11593017	0.81[EUR][1000 genomes]
rs11817587	0.92[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12413082	0.88[CEU][hapmap];0.87[CHB][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];0.81[MKK][hapmap];0.98[TSI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1555800	0.87[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs1555801	0.83[ASN][1000 genomes]
rs1555805	0.92[CEU][hapmap];0.94[CHB][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16923014	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs1975958	0.94[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs1975959	0.84[ASN][1000 genomes]
rs2147940	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2147945	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2296467	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs2886428	0.92[CEU][hapmap];0.87[CHB][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3793757	0.91[ASN][1000 genomes]
rs56201167	0.81[ASN][1000 genomes]
rs7084426	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs722258	0.81[CHB][hapmap];0.80[JPT][hapmap]
rs7919629	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23385800-23401800	Weak transcription	Brain Germinal Matrix	brain
2	chr10:23385800-23409400	Weak transcription	NH-A	brain
3	chr10:23386000-23412000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr10:23386400-23409600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr10:23386400-23411200	Weak transcription	Primary B cells from peripheral blood	blood
6	chr10:23386400-23411200	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr10:23386600-23397800	Weak transcription	NHDF-Ad	bronchial
8	chr10:23386600-23398000	Weak transcription	GM12878-XiMat	blood
9	chr10:23386600-23400600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr10:23386600-23401800	Weak transcription	Fetal Brain Male	brain
11	chr10:23386600-23403600	Weak transcription	Fetal Brain Female	brain
12	chr10:23386600-23407800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr10:23386600-23410600	Weak transcription	Fetal Thymus	thymus
14	chr10:23386600-23412200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr10:23387200-23411400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr10:23388800-23405200	Weak transcription	Psoas Muscle	Psoas
17	chr10:23389200-23402200	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr10:23389200-23407400	Weak transcription	Fetal Kidney	kidney
19	chr10:23389400-23401200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr10:23389400-23402000	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr10:23389400-23410600	Weak transcription	Stomach Mucosa	stomach
22	chr10:23389600-23409000	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr10:23389600-23418600	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr10:23389800-23399200	Weak transcription	HepG2	liver
25	chr10:23389800-23403800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr10:23390000-23405600	Weak transcription	NHEK	skin
27	chr10:23390000-23408200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr10:23390000-23411800	Weak transcription	HUVEC	blood vessel
29	chr10:23390200-23409800	Weak transcription	Small Intestine	intestine
30	chr10:23392400-23404000	Weak transcription	Primary B cells from cord blood	blood
31	chr10:23392400-23410800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr10:23392800-23396800	Strong transcription	Primary neutrophils fromperipheralblood	blood
33	chr10:23392800-23404200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr10:23392800-23410800	Strong transcription	Primary T cells from cord blood	blood
35	chr10:23392800-23410800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr10:23393000-23396800	Strong transcription	Brain Cingulate Gyrus	brain
37	chr10:23393000-23398000	Strong transcription	Rectal Mucosa Donor 31	rectum
38	chr10:23393000-23398400	Strong transcription	Fetal Intestine Small	intestine
39	chr10:23393000-23404200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr10:23393000-23404200	Strong transcription	Fetal Muscle Trunk	muscle
41	chr10:23393000-23405800	Strong transcription	Fetal Intestine Large	intestine
42	chr10:23393000-23410600	Strong transcription	Fetal Stomach	stomach
43	chr10:23393200-23396200	Strong transcription	Primary T helper cells fromperipheralblood	blood
44	chr10:23393200-23396200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr10:23393200-23396800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr10:23393200-23396800	Strong transcription	Osteobl	bone
47	chr10:23393200-23397000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr10:23393200-23398200	Strong transcription	Brain Anterior Caudate	brain
49	chr10:23393200-23398200	Strong transcription	Rectal Mucosa Donor 29	rectum
50	chr10:23393200-23400600	Strong transcription	Primary monocytes fromperipheralblood	blood

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