Variant report

Variant	rs7919629
Chromosome Location	chr10:23388594-23388595
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:23384371-23389991	K562	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:23343262..23345013-chr10:23385017..23389962,4	K562	blood:
2	chr10:23383379..23389769-chr10:23391490..23396055,9	K562	blood:
3	chr10:23388038..23390667-chr10:23391022..23394000,2	MCF-7	breast:
4	chr10:23387685..23389713-chr10:23399173..23400899,2	MCF-7	breast:
5	chr10:23383379..23389460-chr10:23391589..23395775,7	K562	blood:

No data

Variant related genes	Relation type
MSRB2	TF binding region
ENSG00000148450	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11593017	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs11817587	1.00[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12413082	0.96[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1555800	0.88[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs1555801	0.88[ASN][1000 genomes]
rs1555805	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16923014	0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs1975958	0.94[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs1975959	0.89[ASN][1000 genomes]
rs2147940	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2147945	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2296467	0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs2886428	1.00[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3793757	0.96[ASN][1000 genomes]
rs55656603	0.84[ASN][1000 genomes]
rs56201167	0.86[ASN][1000 genomes]
rs6482253	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7084426	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs722258	0.81[CHB][hapmap]

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23385600-23390200	Enhancers	Small Intestine	intestine
2	chr10:23385800-23389200	Enhancers	Liver	Liver
3	chr10:23385800-23393200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr10:23385800-23393400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr10:23385800-23395600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:23385800-23401800	Weak transcription	Brain Germinal Matrix	brain
7	chr10:23385800-23409400	Weak transcription	NH-A	brain
8	chr10:23386000-23388600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr10:23386000-23388600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr10:23386000-23388600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr10:23386000-23388600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr10:23386000-23389200	Enhancers	Brain Substantia Nigra	brain
13	chr10:23386000-23393000	Weak transcription	HSMM	muscle
14	chr10:23386000-23393200	Weak transcription	Gastric	stomach
15	chr10:23386000-23393200	Weak transcription	Thymus	Thymus
16	chr10:23386000-23393200	Weak transcription	Spleen	Spleen
17	chr10:23386000-23412000	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr10:23386200-23388600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr10:23386200-23388800	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr10:23386200-23393000	Weak transcription	Fetal Muscle Trunk	muscle
21	chr10:23386200-23393200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr10:23386200-23393200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr10:23386400-23388800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr10:23386400-23388800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr10:23386400-23388800	Weak transcription	Fetal Kidney	kidney
26	chr10:23386400-23389600	Weak transcription	Primary hematopoietic stem cells	blood
27	chr10:23386400-23393000	Weak transcription	Esophagus	oesophagus
28	chr10:23386400-23393000	Weak transcription	Lung	lung
29	chr10:23386400-23393200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr10:23386400-23393200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr10:23386400-23393200	Weak transcription	Placenta	Placenta
32	chr10:23386400-23393200	Weak transcription	Right Ventricle	heart
33	chr10:23386400-23393400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr10:23386400-23393600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr10:23386400-23394600	Weak transcription	HSMMtube	muscle
36	chr10:23386400-23395400	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr10:23386400-23395600	Weak transcription	Pancreas	Pancrea
38	chr10:23386400-23409600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr10:23386400-23411200	Weak transcription	Primary B cells from peripheral blood	blood
40	chr10:23386400-23411200	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr10:23386600-23388600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr10:23386600-23388800	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr10:23386600-23388800	Weak transcription	Dnd41	blood
44	chr10:23386600-23389200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr10:23386600-23389200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr10:23386600-23389400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr10:23386600-23389400	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr10:23386600-23392600	Weak transcription	Fetal Muscle Leg	muscle
49	chr10:23386600-23392800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr10:23386600-23393000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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