Variant report

Variant	rs12240815
Chromosome Location	chr10:23542526-23542527
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11013286	1.00[EUR][1000 genomes]
rs11013313	1.00[EUR][1000 genomes]
rs11013314	1.00[EUR][1000 genomes]
rs11013345	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11013346	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013411	1.00[EUR][1000 genomes]
rs11013414	1.00[EUR][1000 genomes]
rs11013431	1.00[EUR][1000 genomes]
rs11815995	1.00[EUR][1000 genomes]
rs12240604	1.00[EUR][1000 genomes]
rs12242101	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12244149	1.00[EUR][1000 genomes]
rs12246196	1.00[EUR][1000 genomes]
rs12247263	1.00[YRI][hapmap]
rs12248042	1.00[EUR][1000 genomes]
rs12251091	1.00[EUR][1000 genomes]
rs12252677	1.00[EUR][1000 genomes]
rs12253547	1.00[EUR][1000 genomes]
rs12255738	1.00[EUR][1000 genomes]
rs12257110	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12259381	1.00[EUR][1000 genomes]
rs12260710	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12265525	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12267589	1.00[EUR][1000 genomes]
rs12269034	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12414753	1.00[EUR][1000 genomes]
rs12415049	1.00[EUR][1000 genomes]
rs1555803	1.00[EUR][1000 genomes]
rs1555804	1.00[EUR][1000 genomes]
rs16923022	1.00[EUR][1000 genomes]
rs16923107	1.00[EUR][1000 genomes]
rs28787441	1.00[EUR][1000 genomes]
rs4130996	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4396189	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs4486516	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs57028408	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58872155	1.00[EUR][1000 genomes]
rs59059236	1.00[EUR][1000 genomes]
rs60119752	1.00[EUR][1000 genomes]
rs60278719	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61136507	1.00[EUR][1000 genomes]
rs7067788	1.00[EUR][1000 genomes]
rs74121763	1.00[EUR][1000 genomes]
rs74121767	1.00[EUR][1000 genomes]
rs74121787	1.00[EUR][1000 genomes]
rs74125106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7910382	1.00[EUR][1000 genomes]
rs7916862	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831810	chr10:23445647-23605270	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv466834	chr10:23482635-23623523	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv550213	chr10:23482635-23623523	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23542200-23542600	Enhancers	Liver	Liver
2	chr10:23542200-23543000	Enhancers	HepG2	liver

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