Variant report

Variant	rs74125106
Chromosome Location	chr10:23606222-23606223
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23605004..23607265-chr10:23613036..23614739,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11013313	1.00[EUR][1000 genomes]
rs11013314	1.00[EUR][1000 genomes]
rs11013345	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11013346	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013411	1.00[EUR][1000 genomes]
rs11013414	1.00[EUR][1000 genomes]
rs11013431	1.00[EUR][1000 genomes]
rs12240604	1.00[EUR][1000 genomes]
rs12240815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12242101	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12244149	1.00[EUR][1000 genomes]
rs12246196	1.00[EUR][1000 genomes]
rs12248042	1.00[EUR][1000 genomes]
rs12251091	1.00[EUR][1000 genomes]
rs12252677	1.00[EUR][1000 genomes]
rs12253547	1.00[EUR][1000 genomes]
rs12255738	1.00[EUR][1000 genomes]
rs12257110	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12259381	1.00[EUR][1000 genomes]
rs12260710	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12265525	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12267589	1.00[EUR][1000 genomes]
rs12269034	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16923107	1.00[EUR][1000 genomes]
rs4130996	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4396189	0.85[AFR][1000 genomes]
rs4486516	0.83[AFR][1000 genomes]
rs57028408	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58872155	1.00[EUR][1000 genomes]
rs59059236	1.00[EUR][1000 genomes]
rs60119752	1.00[EUR][1000 genomes]
rs60278719	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61136507	1.00[EUR][1000 genomes]
rs74121763	1.00[EUR][1000 genomes]
rs74121767	1.00[EUR][1000 genomes]
rs74121787	1.00[EUR][1000 genomes]
rs7910382	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv466834	chr10:23482635-23623523	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv550213	chr10:23482635-23623523	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv1805929	chr10:23605716-23607325	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv1818079	chr10:23605716-23607325	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23599800-23632200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:23603200-23607200	Enhancers	Hela-S3	cervix
3	chr10:23605200-23606400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
4	chr10:23605200-23612400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:23606000-23606600	Enhancers	Fetal Stomach	stomach
6	chr10:23606000-23607600	Enhancers	Fetal Lung	lung
7	chr10:23606200-23606400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr10:23606200-23606400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:23606200-23606800	Bivalent Enhancer	Stomach Smooth Muscle	stomach

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