Variant report

Variant	rs12260710
Chromosome Location	chr10:23492172-23492173
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11013346	1.00[AMR][1000 genomes]
rs12240815	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12242101	1.00[AMR][1000 genomes]
rs12269034	1.00[AMR][1000 genomes]
rs4130996	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4396189	1.00[LWK][hapmap]
rs4486516	1.00[LWK][hapmap]
rs57028408	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60278719	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125106	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825301	chr10:23440604-23505846	Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv831810	chr10:23445647-23605270	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv825302	chr10:23457022-23497329	Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2754706	chr10:23477062-23509344	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2756096	chr10:23477062-23509344	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv430137	chr10:23477062-23509344	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv466834	chr10:23482635-23623523	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv550213	chr10:23482635-23623523	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23488600-23494000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:23489000-23493600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
3	chr10:23491200-23492400	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr10:23491600-23492200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
5	chr10:23491600-23492200	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr10:23491600-23494200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
7	chr10:23491800-23494400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
8	chr10:23492000-23492200	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
9	chr10:23492000-23493400	Bivalent Enhancer	Brain Germinal Matrix	brain
10	chr10:23492000-23494400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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