Variant report

Variant	rs11815995
Chromosome Location	chr10:23383826-23383827
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:8)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:8 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr10:23383698-23384159	H1-neurons	neurons:	n/a	chr10:23384142-23384155
2	KAP1	chr10:23383564-23384116	HEK293	kidney:	n/a	n/a
3	MAFK	chr10:23383804-23384119	HepG2	liver:	n/a	n/a
4	POLR2A	chr10:23383642-23384943	K562	blood:	n/a	n/a
5	EP300	chr10:23383773-23384169	SK-N-SH_RA	brain:	n/a	n/a
6	MYC	chr10:23383796-23383833	NB4	blood:	n/a	n/a
7	MAZ	chr10:23383815-23385610	GM12878	blood:	n/a	chr10:23384789-23384799
8	MAZ	chr10:23383516-23385526	IMR90	lung:	n/a	chr10:23384789-23384799

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:23375345..23377248-chr10:23381230..23384056,2	K562	blood:
2	chr10:23383379..23389769-chr10:23391490..23396055,9	K562	blood:
3	chr10:23362935..23364765-chr10:23383758..23385260,2	K562	blood:
4	chr10:23383560..23385979-chr10:23407851..23409432,2	K562	blood:
5	chr10:23383379..23389460-chr10:23391589..23395775,7	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C10orf115-1	chr10:23383749-23384128	XLOC_008748
2	lnc-C10orf115-1	chr10:23383748-23384128	NONHSAT011763

No data

Variant related genes	Relation type
MSRB2	TF binding region
ENSG00000148450	Chromatin interaction
ENSG00000221221	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs11013241	1.00[EUR][1000 genomes]
rs11013243	1.00[EUR][1000 genomes]
rs11013286	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013313	1.00[EUR][1000 genomes]
rs11013314	1.00[EUR][1000 genomes]
rs11013345	1.00[EUR][1000 genomes]
rs11013346	1.00[EUR][1000 genomes]
rs12240604	1.00[EUR][1000 genomes]
rs12240815	1.00[EUR][1000 genomes]
rs12242101	1.00[EUR][1000 genomes]
rs12244149	1.00[EUR][1000 genomes]
rs12244692	1.00[EUR][1000 genomes]
rs12246196	1.00[EUR][1000 genomes]
rs12246812	1.00[EUR][1000 genomes]
rs12248042	1.00[EUR][1000 genomes]
rs12251091	1.00[EUR][1000 genomes]
rs12252677	1.00[EUR][1000 genomes]
rs12253547	1.00[EUR][1000 genomes]
rs12255738	1.00[EUR][1000 genomes]
rs12257110	1.00[EUR][1000 genomes]
rs12259381	1.00[EUR][1000 genomes]
rs12263261	1.00[EUR][1000 genomes]
rs12264254	1.00[EUR][1000 genomes]
rs12264628	1.00[EUR][1000 genomes]
rs12265525	1.00[EUR][1000 genomes]
rs12267589	1.00[EUR][1000 genomes]
rs12269034	1.00[EUR][1000 genomes]
rs12269406	1.00[EUR][1000 genomes]
rs12414753	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12415049	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1555803	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1555804	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16923009	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16923022	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16923031	0.88[AMR][1000 genomes]
rs16923107	1.00[EUR][1000 genomes]
rs28787441	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35010365	1.00[EUR][1000 genomes]
rs4130996	1.00[EUR][1000 genomes]
rs4381280	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs57028408	1.00[EUR][1000 genomes]
rs58872155	1.00[EUR][1000 genomes]
rs60119752	1.00[EUR][1000 genomes]
rs60278719	1.00[EUR][1000 genomes]
rs61136507	1.00[EUR][1000 genomes]
rs61416838	1.00[EUR][1000 genomes]
rs7067788	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7358042	1.00[EUR][1000 genomes]
rs74121763	1.00[EUR][1000 genomes]
rs74121767	1.00[EUR][1000 genomes]
rs74121787	1.00[EUR][1000 genomes]
rs74124511	1.00[EUR][1000 genomes]
rs74124519	1.00[EUR][1000 genomes]
rs74124521	1.00[EUR][1000 genomes]
rs74124522	1.00[EUR][1000 genomes]
rs74124523	1.00[EUR][1000 genomes]
rs7909957	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7916862	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9943348	1.00[EUR][1000 genomes]

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23383400-23384000	Enhancers	H9 Cell Line	embryonic stem cell
2	chr10:23383400-23384000	Enhancers	Hela-S3	cervix
3	chr10:23383400-23385200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr10:23383400-23386400	Active TSS	Duodenum Smooth Muscle	Duodenum
5	chr10:23383600-23384000	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr10:23383600-23384000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr10:23383600-23384000	Flanking Active TSS	Brain Anterior Caudate	brain
8	chr10:23383600-23384200	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr10:23383600-23384200	Flanking Active TSS	Brain Cingulate Gyrus	brain
10	chr10:23383600-23384200	Flanking Active TSS	Brain Hippocampus Middle	brain
11	chr10:23383600-23384600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr10:23383600-23385000	Active TSS	Stomach Smooth Muscle	stomach
13	chr10:23383600-23385200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr10:23383600-23385200	Active TSS	Brain Inferior Temporal Lobe	brain
15	chr10:23383600-23385200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
16	chr10:23383600-23385200	Active TSS	Duodenum Mucosa	Duodenum
17	chr10:23383600-23385200	Active TSS	Osteobl	bone
18	chr10:23383600-23385400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr10:23383600-23385400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr10:23383600-23385400	Active TSS	Pancreatic Islets	Pancreatic Islet
21	chr10:23383600-23385400	Active TSS	NHDF-Ad	bronchial
22	chr10:23383600-23385600	Active TSS	Breast Myoepithelial Primary Cells	Breast
23	chr10:23383600-23385600	Active TSS	Brain Angular Gyrus	brain
24	chr10:23383600-23385600	Active TSS	Right Atrium	heart
25	chr10:23383600-23385800	Active TSS	Aorta	Aorta
26	chr10:23383800-23384000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
27	chr10:23383800-23384000	Enhancers	H1 Cell Line	embryonic stem cell
28	chr10:23383800-23384000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
29	chr10:23383800-23384000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
30	chr10:23383800-23384000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr10:23383800-23384000	Enhancers	Liver	Liver
32	chr10:23383800-23384000	Flanking Active TSS	A549	lung
33	chr10:23383800-23384000	Flanking Bivalent TSS/Enh	HUVEC	blood vessel
34	chr10:23383800-23384200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
35	chr10:23383800-23384200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
36	chr10:23383800-23384200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
37	chr10:23383800-23384200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
38	chr10:23383800-23384200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr10:23383800-23384200	Flanking Active TSS	Adipose Nuclei	Adipose
40	chr10:23383800-23384200	Flanking Active TSS	Fetal Heart	heart
41	chr10:23383800-23384200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
42	chr10:23383800-23384200	Flanking Active TSS	HepG2	liver
43	chr10:23383800-23384200	Flanking Active TSS	HMEC	breast
44	chr10:23383800-23384200	Flanking Active TSS	K562	blood
45	chr10:23383800-23384400	Enhancers	iPS-18 Cell Line	embryonic stem cell
46	chr10:23383800-23385000	Active TSS	Primary T helper cells fromperipheralblood	blood
47	chr10:23383800-23385000	Enhancers	Fetal Brain Male	brain
48	chr10:23383800-23385200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr10:23383800-23385200	Active TSS	Primary T cells from cord blood	blood
50	chr10:23383800-23385200	Active TSS	Primary T helper cells PMA-I stimulated	--

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