Variant report

Variant	rs16923031
Chromosome Location	chr10:23393940-23393941
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:23383379..23389460-chr10:23391589..23395775,7	K562	blood:
2	chr10:23384382..23387002-chr10:23390906..23394349,4	MCF-7	breast:
3	chr10:23383379..23389769-chr10:23391490..23396055,9	K562	blood:

Variant related genes	Relation type
ENSG00000148450	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11013286	0.88[AMR][1000 genomes]
rs11595935	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11815995	0.88[AMR][1000 genomes]
rs12414753	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12415049	0.88[AMR][1000 genomes]
rs1555803	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1555804	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs16923009	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs16923022	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs2147941	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs28787441	0.88[AMR][1000 genomes]
rs4381280	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7067788	0.88[AMR][1000 genomes]
rs7909957	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs7916862	0.88[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23385800-23395600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:23385800-23401800	Weak transcription	Brain Germinal Matrix	brain
3	chr10:23385800-23409400	Weak transcription	NH-A	brain
4	chr10:23386000-23412000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr10:23386400-23394600	Weak transcription	HSMMtube	muscle
6	chr10:23386400-23395400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr10:23386400-23395600	Weak transcription	Pancreas	Pancrea
8	chr10:23386400-23409600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr10:23386400-23411200	Weak transcription	Primary B cells from peripheral blood	blood
10	chr10:23386400-23411200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr10:23386600-23394600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr10:23386600-23397800	Weak transcription	NHDF-Ad	bronchial
13	chr10:23386600-23398000	Weak transcription	GM12878-XiMat	blood
14	chr10:23386600-23400600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr10:23386600-23401800	Weak transcription	Fetal Brain Male	brain
16	chr10:23386600-23403600	Weak transcription	Fetal Brain Female	brain
17	chr10:23386600-23407800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr10:23386600-23410600	Weak transcription	Fetal Thymus	thymus
19	chr10:23386600-23412200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr10:23387200-23411400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr10:23388800-23405200	Weak transcription	Psoas Muscle	Psoas
22	chr10:23389000-23394800	Weak transcription	Brain Hippocampus Middle	brain
23	chr10:23389200-23402200	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr10:23389200-23407400	Weak transcription	Fetal Kidney	kidney
25	chr10:23389400-23401200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr10:23389400-23402000	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr10:23389400-23410600	Weak transcription	Stomach Mucosa	stomach
28	chr10:23389600-23395000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr10:23389600-23409000	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr10:23389600-23418600	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr10:23389800-23399200	Weak transcription	HepG2	liver
32	chr10:23389800-23403800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr10:23390000-23396000	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr10:23390000-23405600	Weak transcription	NHEK	skin
35	chr10:23390000-23408200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr10:23390000-23411800	Weak transcription	HUVEC	blood vessel
37	chr10:23390200-23409800	Weak transcription	Small Intestine	intestine
38	chr10:23390800-23395400	Weak transcription	Primary hematopoietic stem cells	blood
39	chr10:23391600-23395200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr10:23392200-23396000	Strong transcription	Cortex derived primary cultured neurospheres	brain
41	chr10:23392400-23404000	Weak transcription	Primary B cells from cord blood	blood
42	chr10:23392400-23410800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr10:23392800-23394600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr10:23392800-23396800	Strong transcription	Primary neutrophils fromperipheralblood	blood
45	chr10:23392800-23404200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr10:23392800-23410800	Strong transcription	Primary T cells from cord blood	blood
47	chr10:23392800-23410800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr10:23393000-23394000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr10:23393000-23394000	Strong transcription	Esophagus	oesophagus
50	chr10:23393000-23395000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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