Variant report

Variant	rs7070876
Chromosome Location	chr10:955031-955032
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:953280..955249-chr10:957208..959936,2	MCF-7	breast:
2	chr10:954912..957818-chr10:959546..962502,2	K562	blood:
3	chr10:953256..955911-chr10:1033509..1036412,2	K562	blood:
4	chr10:947556..951451-chr10:951605..956878,5	K562	blood:
5	chr10:954781..956729-chr10:976467..978060,2	K562	blood:

Variant related genes	Relation type
ENSG00000107937	Chromatin interaction
ENSG00000107929	Chromatin interaction
ENSG00000205740	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11253504	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11253518	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11253530	0.81[AMR][1000 genomes]
rs12354914	0.87[AMR][1000 genomes]
rs12357633	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12777021	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12781329	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34270668	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35028518	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35306767	0.87[AMR][1000 genomes]
rs35363972	0.81[AMR][1000 genomes]
rs55742421	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61833260	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61833265	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916591	chr10:224406-1088734	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv540386	chr10:224406-1197416	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv1054659	chr10:611444-1133578	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
4	nsv949063	chr10:708293-974870	Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv466697	chr10:734229-1129527	ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
6	nsv549765	chr10:734229-1129527	Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
7	nsv1043812	chr10:776547-981126	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
8	nsv540406	chr10:776547-981126	Bivalent Enhancer Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
9	nsv530116	chr10:776548-1401075	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
10	nsv948978	chr10:813426-1019115	Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
11	nsv1052540	chr10:887562-1300134	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
12	nsv540407	chr10:887562-1300134	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
13	nsv533861	chr10:945438-1382068	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
14	nsv530117	chr10:945438-1729634	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:852200-956400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr10:870600-959400	Weak transcription	Stomach Mucosa	stomach
3	chr10:927600-972600	Weak transcription	Hela-S3	cervix
4	chr10:928000-963200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr10:928000-966400	Weak transcription	Small Intestine	intestine
6	chr10:929400-955800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr10:929400-975800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr10:929400-976400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr10:931400-956000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr10:931600-965400	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr10:931600-967400	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr10:931800-957600	Weak transcription	Aorta	Aorta
13	chr10:932200-955800	Weak transcription	Primary hematopoietic stem cells	blood
14	chr10:935400-964000	Weak transcription	Psoas Muscle	Psoas
15	chr10:940000-970200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr10:940200-967600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr10:940400-955800	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr10:944600-956200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr10:946000-965400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr10:946000-966600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr10:946200-956200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr10:946200-965400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr10:946600-955400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr10:947200-958400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr10:947800-956200	Weak transcription	Colon Smooth Muscle	Colon
26	chr10:947800-975400	Weak transcription	Fetal Brain Male	brain
27	chr10:948400-955400	Weak transcription	HSMMtube	muscle
28	chr10:948800-958600	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr10:949000-959800	Strong transcription	Dnd41	blood
30	chr10:949600-955600	Weak transcription	Fetal Heart	heart
31	chr10:949600-959000	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr10:949600-965400	Weak transcription	Right Ventricle	heart
33	chr10:949600-974600	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr10:949800-956200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr10:950800-956200	Weak transcription	Right Atrium	heart
36	chr10:950800-958400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr10:951000-975400	Weak transcription	Fetal Kidney	kidney
38	chr10:951400-955200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr10:951400-958000	Strong transcription	Duodenum Mucosa	Duodenum
40	chr10:951400-958800	Strong transcription	Fetal Stomach	stomach
41	chr10:951600-955800	Weak transcription	Rectal Smooth Muscle	rectum
42	chr10:951600-958600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr10:951800-956200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr10:951800-956400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr10:951800-956400	Weak transcription	NHLF	lung
46	chr10:952000-958000	Strong transcription	Placenta	Placenta
47	chr10:952200-956200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr10:952200-957400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr10:952200-958000	Strong transcription	Primary B cells from cord blood	blood
50	chr10:952200-958200	Strong transcription	Fetal Muscle Leg	muscle

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