Variant report

Variant	rs7071514
Chromosome Location	chr10:49518363-49518364
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:49518153..49519864-chr10:49521781..49524737,2	MCF-7	breast:
2	chr10:49516260..49519086-chr10:49729762..49732585,2	K562	blood:
3	chr10:49517027..49519236-chr10:49642083..49643882,2	K562	blood:
4	chr10:49517657..49518610-chr10:49713350..49714126,2	MCF-7	breast:
5	chr10:49517751..49518571-chr10:49540674..49541220,2	MCF-7	breast:
6	chr10:49517538..49519332-chr10:49540338..49542175,2	MCF-7	breast:
7	chr10:49518118..49521667-chr10:49532319..49534589,3	K562	blood:
8	chr10:49513387..49516033-chr10:49518059..49520914,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000128805	Chromatin interaction
ENSG00000107643	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11101314	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs11816450	1.00[MEX][hapmap]
rs11819269	1.00[MEX][hapmap]
rs17011328	1.00[MEX][hapmap]
rs17770408	0.86[EUR][1000 genomes]
rs280612	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895366	chr10:49299274-49576454	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv895368	chr10:49381635-49551560	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv467190	chr10:49402084-49576878	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv550811	chr10:49402084-49576878	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv550812	chr10:49484698-49524715	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49515600-49525600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr10:49515600-49541400	Weak transcription	Lung	lung
3	chr10:49515800-49522200	Weak transcription	Aorta	Aorta
4	chr10:49516000-49518800	Enhancers	Primary T cells from cord blood	blood
5	chr10:49516000-49518800	Enhancers	Duodenum Mucosa	Duodenum
6	chr10:49516000-49519400	Enhancers	Liver	Liver
7	chr10:49516000-49521000	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr10:49516000-49524600	Weak transcription	Stomach Mucosa	stomach
9	chr10:49516000-49525400	Weak transcription	Left Ventricle	heart
10	chr10:49516000-49525600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:49516000-49525600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr10:49516200-49524400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr10:49516400-49518400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr10:49516400-49518400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr10:49516400-49518400	Enhancers	HUVEC	blood vessel
16	chr10:49516400-49518600	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr10:49516400-49519000	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr10:49516400-49519600	Enhancers	Pancreatic Islets	Pancreatic Islet
19	chr10:49516400-49519800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr10:49516400-49521800	Weak transcription	Right Ventricle	heart
21	chr10:49516400-49525400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr10:49516400-49525600	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr10:49516400-49525600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr10:49516400-49525600	Weak transcription	Brain Anterior Caudate	brain
25	chr10:49516400-49526400	Weak transcription	Brain Substantia Nigra	brain
26	chr10:49516400-49528000	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr10:49516400-49528600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr10:49516400-49535000	Weak transcription	Fetal Muscle Leg	muscle
29	chr10:49516400-49538400	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr10:49516400-49538800	Weak transcription	Fetal Muscle Trunk	muscle
31	chr10:49516400-49541400	Weak transcription	Right Atrium	heart
32	chr10:49516400-49547200	Weak transcription	Brain Cingulate Gyrus	brain
33	chr10:49516400-49559600	Weak transcription	Rectal Smooth Muscle	rectum
34	chr10:49516600-49518400	Weak transcription	Ovary	ovary
35	chr10:49516600-49519200	Enhancers	Small Intestine	intestine
36	chr10:49516600-49519800	Weak transcription	Primary hematopoietic stem cells	blood
37	chr10:49516600-49520000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr10:49516600-49520000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr10:49516600-49525200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr10:49516600-49525400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr10:49516600-49538400	Weak transcription	Primary B cells from cord blood	blood
42	chr10:49516600-49538600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr10:49516600-49538600	Weak transcription	Fetal Stomach	stomach
44	chr10:49516800-49519000	Enhancers	Fetal Brain Male	brain
45	chr10:49516800-49524400	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr10:49517000-49518600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
47	chr10:49517200-49518400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
48	chr10:49517200-49518800	Enhancers	Brain Germinal Matrix	brain
49	chr10:49517200-49519000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr10:49517200-49520000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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