Variant report

Variant	rs11816450
Chromosome Location	chr10:49440168-49440169
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:49438438..49440728-chr10:49443853..49445839,2	K562	blood:
2	chr10:49438433..49440728-chr10:49443022..49446570,3	K562	blood:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs11101265	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11101314	1.00[MEX][hapmap]
rs11819269	0.84[LWK][hapmap];1.00[MEX][hapmap]
rs12246849	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12249536	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12252237	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12262288	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1429801	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1429802	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1465605	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1550774	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs1623017	1.00[CEU][hapmap]
rs1652243	1.00[ASN][1000 genomes]
rs1652245	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs166815	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs166817	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17009533	1.00[JPT][hapmap]
rs17011328	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1730444	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1730446	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1881733	1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1881734	1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1881739	1.00[GIH][hapmap]
rs204006	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2455321	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2463958	1.00[ASN][1000 genomes]
rs2590379	1.00[CEU][hapmap]
rs2590387	1.00[CEU][hapmap]
rs2590388	1.00[CEU][hapmap]
rs2652408	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2698764	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2698769	1.00[GIH][hapmap]
rs280605	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs280606	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs280608	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs280610	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs280611	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs280612	1.00[MEX][hapmap]
rs280615	1.00[ASN][1000 genomes]
rs3730154	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs386570	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs399419	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs413065	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs426153	1.00[ASN][1000 genomes]
rs440943	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs477693	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs477761	1.00[ASN][1000 genomes]
rs57345918	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58787956	0.86[EUR][1000 genomes]
rs60503953	1.00[ASN][1000 genomes]
rs61840508	1.00[ASN][1000 genomes]
rs7071514	1.00[MEX][hapmap]
rs7073154	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7092864	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7098618	1.00[CEU][hapmap]
rs73294242	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73294264	1.00[ASN][1000 genomes]
rs73296347	1.00[ASN][1000 genomes]
rs73296348	1.00[ASN][1000 genomes]
rs73296380	1.00[ASN][1000 genomes]
rs73296381	1.00[ASN][1000 genomes]
rs73296386	1.00[ASN][1000 genomes]
rs73296387	1.00[ASN][1000 genomes]
rs74130209	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7915014	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7915333	1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831864	chr10:49299274-49450299	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv895366	chr10:49299274-49576454	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv895367	chr10:49333754-49491047	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv895368	chr10:49381635-49551560	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv467190	chr10:49402084-49576878	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv550811	chr10:49402084-49576878	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv895370	chr10:49421173-49484698	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49431600-49441400	Weak transcription	Brain Anterior Caudate	brain
2	chr10:49437800-49440800	Enhancers	Dnd41	blood
3	chr10:49437800-49442000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr10:49439000-49441000	Enhancers	Fetal Thymus	thymus
5	chr10:49439400-49440200	Flanking Active TSS	GM12878-XiMat	blood
6	chr10:49439600-49440200	Enhancers	Primary T cells from cord blood	blood
7	chr10:49440000-49440200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links