Variant report

Variant	rs1881739
Chromosome Location	chr10:49592561-49592562
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:49590873..49596805-chr10:49597234..49602162,8	K562	blood:
2	chr10:49592537..49595481-chr10:49609552..49611055,2	K562	blood:
3	chr10:49584975..49587441-chr10:49590002..49593282,3	K562	blood:
4	chr10:49584866..49587796-chr10:49589937..49592814,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000107643	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10735224	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10735225	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10776599	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10776605	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs10857569	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10857570	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11101265	1.00[GIH][hapmap]
rs11101337	1.00[CEU][hapmap]
rs11816450	1.00[GIH][hapmap]
rs12249536	1.00[GIH][hapmap]
rs12252237	1.00[GIH][hapmap]
rs1429801	1.00[GIH][hapmap]
rs1550774	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17011328	1.00[GIH][hapmap]
rs1814473	1.00[CEU][hapmap]
rs1867575	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs1919705	1.00[CEU][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1978998	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2463956	1.00[LWK][hapmap];0.83[AFR][1000 genomes]
rs2590379	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2590380	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2590387	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2590388	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2590390	0.92[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2698760	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2698765	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2698769	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3730154	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3867450	1.00[CEU][hapmap]
rs4012795	1.00[CEU][hapmap]
rs4012801	1.00[CEU][hapmap]
rs4141840	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4385845	0.82[ASW][hapmap]
rs58181014	0.86[AFR][1000 genomes]
rs7085678	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73293181	0.80[AFR][1000 genomes]
rs73293198	0.90[AFR][1000 genomes]
rs74130259	1.00[EUR][1000 genomes]
rs74130281	1.00[EUR][1000 genomes]
rs754368	1.00[EUR][1000 genomes]
rs7893756	0.82[ASW][hapmap]
rs7894863	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs935275	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49586400-49592600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr10:49587600-49599600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr10:49590200-49592600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr10:49590200-49592600	Weak transcription	Fetal Lung	lung
5	chr10:49590200-49592800	Weak transcription	HSMMtube	muscle
6	chr10:49590200-49596400	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr10:49590200-49596800	Weak transcription	Left Ventricle	heart
8	chr10:49590200-49598400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr10:49590200-49598800	Weak transcription	A549	lung
10	chr10:49590200-49599600	Weak transcription	Pancreas	Pancrea
11	chr10:49590400-49598600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr10:49590400-49599000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr10:49591000-49592800	Enhancers	HMEC	breast
14	chr10:49591000-49593400	Enhancers	Fetal Intestine Large	intestine
15	chr10:49591200-49592600	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr10:49591200-49592600	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr10:49591200-49592800	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr10:49591200-49592800	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr10:49591200-49593000	Enhancers	H1 Cell Line	embryonic stem cell
20	chr10:49591200-49593000	Enhancers	K562	blood
21	chr10:49591200-49593200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr10:49591200-49593200	Enhancers	Fetal Heart	heart
23	chr10:49591200-49595400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr10:49591400-49592800	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr10:49591400-49599600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr10:49591600-49592600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr10:49591600-49592800	Weak transcription	HSMM	muscle
28	chr10:49591600-49592800	Weak transcription	Osteobl	bone
29	chr10:49591800-49592600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr10:49591800-49597200	Weak transcription	NHDF-Ad	bronchial
31	chr10:49591800-49599000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr10:49592000-49592800	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr10:49592000-49593400	Enhancers	Ovary	ovary
34	chr10:49592000-49597600	Weak transcription	HUVEC	blood vessel
35	chr10:49592200-49592800	Weak transcription	Right Atrium	heart
36	chr10:49592200-49597400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr10:49592400-49592600	Enhancers	Duodenum Smooth Muscle	Duodenum
38	chr10:49592400-49592600	Enhancers	Pancreatic Islets	Pancreatic Islet
39	chr10:49592400-49592800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr10:49592400-49593600	Enhancers	Fetal Kidney	kidney
41	chr10:49592400-49597600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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