Variant report

Variant	rs2463956
Chromosome Location	chr10:49565888-49565889
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1550774	1.00[LWK][hapmap];0.86[AFR][1000 genomes]
rs1881739	1.00[LWK][hapmap];0.83[AFR][1000 genomes]
rs1919705	0.81[AFR][1000 genomes]
rs1978998	0.83[AFR][1000 genomes]
rs2590379	0.86[AFR][1000 genomes]
rs2590380	0.86[AFR][1000 genomes]
rs2590387	0.86[AFR][1000 genomes]
rs2698760	0.86[AFR][1000 genomes]
rs2698765	0.86[AFR][1000 genomes]
rs2698769	1.00[LWK][hapmap]
rs3730154	1.00[LWK][hapmap]
rs4385845	0.83[YRI][hapmap]
rs572211	0.85[YRI][hapmap]
rs58181014	0.90[AFR][1000 genomes]
rs7893756	0.83[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895366	chr10:49299274-49576454	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv467190	chr10:49402084-49576878	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv550811	chr10:49402084-49576878	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	nsv6587	chr10:49526329-49571804	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49542800-49568000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:49543000-49576200	Weak transcription	Right Atrium	heart
3	chr10:49552600-49568800	Weak transcription	NHDF-Ad	bronchial
4	chr10:49559600-49568000	Weak transcription	Ovary	ovary
5	chr10:49559600-49572000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:49562000-49566800	Weak transcription	Fetal Heart	heart
7	chr10:49562600-49567000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr10:49563600-49572000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:49565200-49566000	Enhancers	HUVEC	blood vessel
10	chr10:49565400-49568400	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr10:49565600-49566000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr10:49565800-49566000	Enhancers	Adipose Nuclei	Adipose
13	chr10:49565800-49568000	Weak transcription	Psoas Muscle	Psoas

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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