Variant report

Variant	rs7893756
Chromosome Location	chr10:49625780-49625781
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:49598612..49601205-chr10:49623829..49626212,2	K562	blood:
2	chr10:49574275..49576561-chr10:49624083..49626541,2	K562	blood:
3	chr10:49625430..49627582-chr10:49637563..49639868,2	K562	blood:

Variant related genes	Relation type
ENSG00000107643	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10857568	0.84[AFR][1000 genomes]
rs1550774	0.82[ASW][hapmap]
rs1881739	0.82[ASW][hapmap]
rs2463956	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs2698769	0.82[ASW][hapmap]
rs3730154	0.82[ASW][hapmap]
rs4281444	0.87[AFR][1000 genomes]
rs4385845	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1039508	chr10:49595718-49654403	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49607600-49647800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:49607600-49652400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:49608000-49645600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr10:49608200-49634400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr10:49612000-49664200	Weak transcription	Thymus	Thymus
6	chr10:49612800-49660200	Weak transcription	Aorta	Aorta
7	chr10:49614800-49638400	Weak transcription	HUVEC	blood vessel
8	chr10:49619000-49664200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr10:49619600-49628000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr10:49619600-49634000	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr10:49619600-49645600	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr10:49619800-49634400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr10:49620600-49643400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr10:49620800-49626000	Weak transcription	Ovary	ovary
15	chr10:49620800-49634000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr10:49620800-49634400	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr10:49620800-49643400	Weak transcription	Right Ventricle	heart
18	chr10:49620800-49646800	Weak transcription	Hela-S3	cervix
19	chr10:49620800-49647000	Weak transcription	NHDF-Ad	bronchial
20	chr10:49620800-49647600	Weak transcription	Colonic Mucosa	Colon
21	chr10:49620800-49652400	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr10:49620800-49658600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr10:49621000-49638400	Weak transcription	Fetal Stomach	stomach
24	chr10:49621000-49638800	Weak transcription	Brain Germinal Matrix	brain
25	chr10:49621200-49626000	Weak transcription	Brain Anterior Caudate	brain
26	chr10:49621200-49632000	Weak transcription	Psoas Muscle	Psoas
27	chr10:49621200-49638400	Weak transcription	Fetal Muscle Leg	muscle
28	chr10:49621200-49638800	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr10:49621200-49641600	Weak transcription	Small Intestine	intestine
30	chr10:49621200-49641800	Weak transcription	Rectal Smooth Muscle	rectum
31	chr10:49621200-49643400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr10:49621200-49647000	Weak transcription	Fetal Intestine Small	intestine
33	chr10:49621200-49647400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr10:49621200-49647800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr10:49621200-49657400	Weak transcription	Brain Hippocampus Middle	brain
36	chr10:49621400-49626000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr10:49621400-49631000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr10:49621400-49633200	Weak transcription	Primary B cells from cord blood	blood
39	chr10:49621400-49634000	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr10:49621400-49634000	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr10:49621400-49634000	Weak transcription	Liver	Liver
42	chr10:49621400-49634000	Weak transcription	Placenta	Placenta
43	chr10:49621400-49634000	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr10:49621400-49634000	Weak transcription	Stomach Smooth Muscle	stomach
45	chr10:49621400-49634400	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr10:49621400-49634600	Weak transcription	Primary B cells from peripheral blood	blood
47	chr10:49621400-49637200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr10:49621400-49638000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr10:49621400-49641600	Weak transcription	Duodenum Mucosa	Duodenum
50	chr10:49621400-49641800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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