Variant report

Variant	rs1919705
Chromosome Location	chr10:49593597-49593598
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:49590873..49596805-chr10:49597234..49602162,8	K562	blood:
2	chr10:49592537..49595481-chr10:49609552..49611055,2	K562	blood:

Variant related genes	Relation type
ENSG00000107643	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10735224	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10735225	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10776599	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10776605	1.00[CEU][hapmap]
rs10857569	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10857570	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11101337	1.00[CEU][hapmap]
rs1550774	0.92[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1814473	1.00[CEU][hapmap]
rs1867575	1.00[CEU][hapmap]
rs1881739	1.00[CEU][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1978998	1.00[CEU][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2463956	0.81[AFR][1000 genomes]
rs2590379	0.92[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2590380	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2590387	0.93[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2590388	1.00[CEU][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2590390	0.86[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2698760	1.00[CEU][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2698765	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2698769	1.00[CEU][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3730154	0.92[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3867450	1.00[CEU][hapmap]
rs4012795	1.00[CEU][hapmap]
rs4012801	1.00[CEU][hapmap]
rs4141840	1.00[CEU][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58181014	0.84[AFR][1000 genomes]
rs7085678	1.00[CEU][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73293198	0.89[AFR][1000 genomes]
rs74130259	1.00[EUR][1000 genomes]
rs74130281	1.00[EUR][1000 genomes]
rs754368	1.00[EUR][1000 genomes]
rs7894863	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs935275	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49587600-49599600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:49590200-49596400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr10:49590200-49596800	Weak transcription	Left Ventricle	heart
4	chr10:49590200-49598400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr10:49590200-49598800	Weak transcription	A549	lung
6	chr10:49590200-49599600	Weak transcription	Pancreas	Pancrea
7	chr10:49590400-49598600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr10:49590400-49599000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr10:49591200-49595400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr10:49591400-49599600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr10:49591800-49597200	Weak transcription	NHDF-Ad	bronchial
12	chr10:49591800-49599000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr10:49592000-49597600	Weak transcription	HUVEC	blood vessel
14	chr10:49592200-49597400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr10:49592400-49593600	Enhancers	Fetal Kidney	kidney
16	chr10:49592400-49597600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr10:49592600-49593600	Enhancers	Muscle Satellite Cultured Cells	--
18	chr10:49592600-49595800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr10:49592600-49597400	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr10:49592600-49597600	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr10:49592800-49593600	Enhancers	GM12878-XiMat	blood
22	chr10:49592800-49597400	Weak transcription	HMEC	breast
23	chr10:49593000-49595600	Weak transcription	K562	blood
24	chr10:49593000-49596800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr10:49593000-49597400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr10:49593000-49598000	Weak transcription	Right Atrium	heart
27	chr10:49593000-49599000	Weak transcription	Primary hematopoietic stem cells	blood
28	chr10:49593200-49594600	Weak transcription	Osteobl	bone
29	chr10:49593200-49597200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr10:49593200-49597200	Weak transcription	Fetal Heart	heart
31	chr10:49593200-49597600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr10:49593200-49599000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr10:49593200-49607600	Weak transcription	Fetal Lung	lung
34	chr10:49593400-49594600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr10:49593400-49594600	Weak transcription	Fetal Intestine Large	intestine
36	chr10:49593400-49594600	Weak transcription	Ovary	ovary
37	chr10:49593400-49597400	Weak transcription	Colon Smooth Muscle	Colon
38	chr10:49593400-49597400	Weak transcription	HSMMtube	muscle
39	chr10:49593400-49599000	Weak transcription	HSMM	muscle

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