Variant report

Variant	rs754368
Chromosome Location	chr10:49656707-49656708
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:49655464..49657774-chr10:49727812..49730499,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10735224	1.00[EUR][1000 genomes]
rs10735225	1.00[EUR][1000 genomes]
rs10776599	1.00[EUR][1000 genomes]
rs10857569	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10857570	1.00[EUR][1000 genomes]
rs1814473	0.89[AMR][1000 genomes]
rs1881739	1.00[EUR][1000 genomes]
rs1919705	1.00[EUR][1000 genomes]
rs1978998	1.00[EUR][1000 genomes]
rs2590387	1.00[EUR][1000 genomes]
rs2590390	1.00[EUR][1000 genomes]
rs2698760	1.00[EUR][1000 genomes]
rs4838599	0.89[AMR][1000 genomes]
rs7085678	1.00[EUR][1000 genomes]
rs74130259	1.00[EUR][1000 genomes]
rs74130281	1.00[EUR][1000 genomes]
rs7894863	1.00[EUR][1000 genomes]
rs935275	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49612000-49664200	Weak transcription	Thymus	Thymus
2	chr10:49612800-49660200	Weak transcription	Aorta	Aorta
3	chr10:49619000-49664200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr10:49620800-49658600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr10:49621200-49657400	Weak transcription	Brain Hippocampus Middle	brain
6	chr10:49621400-49658600	Weak transcription	Brain Substantia Nigra	brain
7	chr10:49621400-49664400	Weak transcription	Brain Angular Gyrus	brain
8	chr10:49624600-49664800	Weak transcription	Gastric	stomach
9	chr10:49626600-49664400	Weak transcription	Spleen	Spleen
10	chr10:49639600-49657800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr10:49644200-49664400	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr10:49644600-49660400	Weak transcription	Brain Anterior Caudate	brain
13	chr10:49646200-49657200	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr10:49647800-49663000	Weak transcription	NHEK	skin
15	chr10:49647800-49664400	Weak transcription	Fetal Intestine Small	intestine
16	chr10:49648000-49664400	Weak transcription	Right Atrium	heart
17	chr10:49648600-49657800	Weak transcription	Ovary	ovary
18	chr10:49649000-49656800	Strong transcription	NHLF	lung
19	chr10:49650600-49664000	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr10:49651800-49657200	Weak transcription	HSMMtube	muscle
21	chr10:49652000-49673000	Weak transcription	HMEC	breast
22	chr10:49652400-49657000	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr10:49652600-49658200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr10:49652600-49664200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr10:49653000-49660400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr10:49653000-49673600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr10:49653200-49662400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr10:49653200-49663600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr10:49653400-49657800	Weak transcription	Right Ventricle	heart
30	chr10:49653400-49659400	Weak transcription	Pancreas	Pancrea
31	chr10:49653600-49657000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr10:49653600-49662400	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr10:49653600-49664400	Weak transcription	Esophagus	oesophagus
34	chr10:49653600-49664600	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr10:49654000-49657200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr10:49654600-49656800	Weak transcription	Fetal Stomach	stomach
37	chr10:49655200-49656800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr10:49655200-49677800	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr10:49655600-49657400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr10:49655800-49656800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr10:49655800-49656800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr10:49655800-49657000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr10:49656000-49657600	Weak transcription	Brain Cingulate Gyrus	brain
44	chr10:49656000-49661800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr10:49656200-49657600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr10:49656400-49657000	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr10:49656400-49658400	Genic enhancers	Osteobl	bone
48	chr10:49656600-49657200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
49	chr10:49656600-49657200	Genic enhancers	K562	blood
50	chr10:49656600-49657400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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