Variant report

Variant	rs10776599
Chromosome Location	chr10:49653574-49653575
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:49653089..49653710-chr10:49671711..49672225,2	MCF-7	breast:
2	chr10:49570787..49573176-chr10:49651060..49654395,3	MCF-7	breast:
3	chr10:49652826..49653738-chr10:49713419..49714145,4	MCF-7	breast:
4	chr10:49652137..49653652-chr10:49714272..49715285,12	MCF-7	breast:
5	chr10:49653221..49653731-chr10:49714626..49715186,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ARHGAP22-2	chr10:49651879-49653859	NONHSAT013269

No data

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10735224	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10735225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10857569	1.00[EUR][1000 genomes]
rs10857570	1.00[EUR][1000 genomes]
rs1542153	1.00[AMR][1000 genomes]
rs1550774	0.87[AFR][1000 genomes]
rs1881739	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1919705	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1978998	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2590379	0.87[AFR][1000 genomes]
rs2590380	0.87[AFR][1000 genomes]
rs2590387	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2590388	0.94[AFR][1000 genomes]
rs2590390	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2698760	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2698765	0.87[AFR][1000 genomes]
rs2698769	0.94[AFR][1000 genomes]
rs3730154	0.92[AFR][1000 genomes]
rs4141840	0.94[AFR][1000 genomes]
rs4281444	0.86[AFR][1000 genomes]
rs7085678	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73293198	0.81[AFR][1000 genomes]
rs74130259	1.00[EUR][1000 genomes]
rs74130281	1.00[EUR][1000 genomes]
rs754368	1.00[EUR][1000 genomes]
rs7894863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs935275	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1039508	chr10:49595718-49654403	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49612000-49664200	Weak transcription	Thymus	Thymus
2	chr10:49612800-49660200	Weak transcription	Aorta	Aorta
3	chr10:49619000-49664200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr10:49620800-49658600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr10:49621200-49657400	Weak transcription	Brain Hippocampus Middle	brain
6	chr10:49621400-49658600	Weak transcription	Brain Substantia Nigra	brain
7	chr10:49621400-49664400	Weak transcription	Brain Angular Gyrus	brain
8	chr10:49624600-49664800	Weak transcription	Gastric	stomach
9	chr10:49625800-49654400	Weak transcription	A549	lung
10	chr10:49626600-49664400	Weak transcription	Spleen	Spleen
11	chr10:49639600-49657800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr10:49644200-49655000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr10:49644200-49664400	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr10:49644600-49656600	Weak transcription	HUVEC	blood vessel
15	chr10:49644600-49660400	Weak transcription	Brain Anterior Caudate	brain
16	chr10:49644800-49654800	Weak transcription	Stomach Smooth Muscle	stomach
17	chr10:49646200-49657200	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr10:49646600-49653800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr10:49646600-49655200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr10:49647800-49663000	Weak transcription	NHEK	skin
21	chr10:49647800-49664400	Weak transcription	Fetal Intestine Small	intestine
22	chr10:49648000-49656600	Weak transcription	NH-A	brain
23	chr10:49648000-49664400	Weak transcription	Right Atrium	heart
24	chr10:49648600-49656600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr10:49648600-49657800	Weak transcription	Ovary	ovary
26	chr10:49648800-49656600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr10:49649000-49656800	Strong transcription	NHLF	lung
28	chr10:49649200-49656400	Strong transcription	Osteobl	bone
29	chr10:49650000-49655800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr10:49650400-49653800	Strong transcription	NHDF-Ad	bronchial
31	chr10:49650600-49664000	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr10:49650800-49653600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr10:49651200-49653600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr10:49651200-49656600	Weak transcription	Primary hematopoietic stem cells	blood
35	chr10:49651800-49657200	Weak transcription	HSMMtube	muscle
36	chr10:49652000-49673000	Weak transcription	HMEC	breast
37	chr10:49652200-49653600	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr10:49652200-49655800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr10:49652400-49653600	Enhancers	H1 Cell Line	embryonic stem cell
40	chr10:49652400-49653800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr10:49652400-49655200	Weak transcription	HSMM	muscle
42	chr10:49652400-49657000	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr10:49652600-49653600	Enhancers	Fetal Muscle Leg	muscle
44	chr10:49652600-49655400	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr10:49652600-49658200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr10:49652600-49664200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr10:49652800-49654000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
48	chr10:49652800-49654000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
49	chr10:49652800-49656000	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
50	chr10:49652800-49656600	Strong transcription	Muscle Satellite Cultured Cells	--

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