Variant report

Variant	rs935275
Chromosome Location	chr10:49657815-49657816
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:49656960..49659502-chr10:49666267..49668119,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10735224	1.00[EUR][1000 genomes]
rs10735225	1.00[EUR][1000 genomes]
rs10776599	1.00[EUR][1000 genomes]
rs10857569	1.00[EUR][1000 genomes]
rs10857570	1.00[EUR][1000 genomes]
rs1881739	1.00[EUR][1000 genomes]
rs1919705	1.00[EUR][1000 genomes]
rs1978998	1.00[EUR][1000 genomes]
rs2590387	1.00[EUR][1000 genomes]
rs2590390	1.00[EUR][1000 genomes]
rs2698760	1.00[EUR][1000 genomes]
rs7085678	1.00[EUR][1000 genomes]
rs74130259	1.00[EUR][1000 genomes]
rs74130281	1.00[EUR][1000 genomes]
rs754368	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7894863	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49612000-49664200	Weak transcription	Thymus	Thymus
2	chr10:49612800-49660200	Weak transcription	Aorta	Aorta
3	chr10:49619000-49664200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr10:49620800-49658600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr10:49621400-49658600	Weak transcription	Brain Substantia Nigra	brain
6	chr10:49621400-49664400	Weak transcription	Brain Angular Gyrus	brain
7	chr10:49624600-49664800	Weak transcription	Gastric	stomach
8	chr10:49626600-49664400	Weak transcription	Spleen	Spleen
9	chr10:49644200-49664400	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr10:49644600-49660400	Weak transcription	Brain Anterior Caudate	brain
11	chr10:49647800-49663000	Weak transcription	NHEK	skin
12	chr10:49647800-49664400	Weak transcription	Fetal Intestine Small	intestine
13	chr10:49648000-49664400	Weak transcription	Right Atrium	heart
14	chr10:49650600-49664000	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr10:49652000-49673000	Weak transcription	HMEC	breast
16	chr10:49652600-49658200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr10:49652600-49664200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr10:49653000-49660400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr10:49653000-49673600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr10:49653200-49662400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr10:49653200-49663600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr10:49653400-49659400	Weak transcription	Pancreas	Pancrea
23	chr10:49653600-49662400	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr10:49653600-49664400	Weak transcription	Esophagus	oesophagus
25	chr10:49653600-49664600	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr10:49655200-49677800	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr10:49656000-49661800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr10:49656400-49658400	Genic enhancers	Osteobl	bone
29	chr10:49656600-49658200	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr10:49656600-49658200	Enhancers	HUVEC	blood vessel
31	chr10:49656600-49658200	Enhancers	NH-A	brain
32	chr10:49656600-49658200	Enhancers	NHDF-Ad	bronchial
33	chr10:49656600-49658400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr10:49656600-49658600	Genic enhancers	Muscle Satellite Cultured Cells	--
35	chr10:49656600-49662200	Strong transcription	Primary hematopoietic stem cells	blood
36	chr10:49656800-49658000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr10:49656800-49658200	Enhancers	Adipose Nuclei	Adipose
38	chr10:49656800-49662000	Strong transcription	Fetal Stomach	stomach
39	chr10:49657200-49658000	Enhancers	Skeletal Muscle Female	skeletal muscle
40	chr10:49657200-49658000	Strong transcription	K562	blood
41	chr10:49657200-49661200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr10:49657400-49658000	Enhancers	Fetal Muscle Trunk	muscle
43	chr10:49657400-49658400	Genic enhancers	Brain Hippocampus Middle	brain
44	chr10:49657400-49659600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr10:49657600-49658000	Enhancers	Brain Cingulate Gyrus	brain
46	chr10:49657600-49658200	Genic enhancers	HSMM	muscle
47	chr10:49657600-49660800	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr10:49657600-49660800	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr10:49657600-49662000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
50	chr10:49657600-49662600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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