Variant report

Variant	rs58181014
Chromosome Location	chr10:49557846-49557847
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1550774	0.89[AFR][1000 genomes]
rs1881739	0.86[AFR][1000 genomes]
rs1919705	0.84[AFR][1000 genomes]
rs1978998	0.85[AFR][1000 genomes]
rs2463956	0.90[AFR][1000 genomes]
rs2590379	0.89[AFR][1000 genomes]
rs2590380	0.89[AFR][1000 genomes]
rs2590387	0.89[AFR][1000 genomes]
rs2590388	0.83[AFR][1000 genomes]
rs2590390	0.83[AFR][1000 genomes]
rs2698760	0.89[AFR][1000 genomes]
rs2698765	0.89[AFR][1000 genomes]
rs2698769	0.83[AFR][1000 genomes]
rs3730154	0.81[AFR][1000 genomes]
rs4141840	0.83[AFR][1000 genomes]
rs7085678	0.83[AFR][1000 genomes]
rs73293181	0.81[AFR][1000 genomes]
rs73293198	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895366	chr10:49299274-49576454	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv467190	chr10:49402084-49576878	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv550811	chr10:49402084-49576878	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	nsv6587	chr10:49526329-49571804	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49516400-49559600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr10:49541200-49559400	Weak transcription	Fetal Lung	lung
3	chr10:49542800-49568000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:49543000-49576200	Weak transcription	Right Atrium	heart
5	chr10:49550400-49560800	Weak transcription	Psoas Muscle	Psoas
6	chr10:49552600-49558200	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr10:49552600-49568800	Weak transcription	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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