Variant report

Variant	rs7075696
Chromosome Location	chr10:28691751-28691752
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs61652850	1.00[AMR][1000 genomes]
rs73608072	1.00[AMR][1000 genomes]
rs73608086	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041555	chr10:28419399-29304934	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28687600-28692800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:28687600-28694800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr10:28688600-28699000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr10:28689000-28692400	Enhancers	Primary B cells from peripheral blood	blood
5	chr10:28689000-28693000	Enhancers	Primary B cells from cord blood	blood
6	chr10:28689200-28692600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
7	chr10:28689200-28694400	Weak transcription	Stomach Mucosa	stomach
8	chr10:28689800-28693800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr10:28690200-28692000	Weak transcription	Fetal Muscle Leg	muscle
10	chr10:28690200-28693400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr10:28690400-28692200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:28690400-28693400	Weak transcription	Duodenum Mucosa	Duodenum
13	chr10:28690600-28692400	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr10:28690800-28692400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr10:28690800-28692400	Enhancers	Primary hematopoietic stem cells	blood
16	chr10:28691000-28692400	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr10:28691000-28692400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr10:28691000-28692600	Enhancers	GM12878-XiMat	blood
19	chr10:28691200-28692200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr10:28691400-28691800	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr10:28691400-28692200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr10:28691400-28692200	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr10:28691600-28692200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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