Variant report

Variant	rs73608086
Chromosome Location	chr10:28653501-28653502
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs56920399	1.00[AMR][1000 genomes]
rs59019458	1.00[AMR][1000 genomes]
rs61652850	1.00[AMR][1000 genomes]
rs7075696	1.00[AMR][1000 genomes]
rs73608060	1.00[AMR][1000 genomes]
rs73608069	1.00[AMR][1000 genomes]
rs73608072	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1041555	chr10:28419399-29304934	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	nsv1044938	chr10:28601993-28659440	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28644400-28665000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:28645000-28653600	Weak transcription	Fetal Intestine Large	intestine
3	chr10:28647400-28654600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr10:28648400-28654200	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr10:28649600-28654600	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr10:28652000-28653600	Enhancers	Primary hematopoietic stem cells	blood
7	chr10:28653000-28654600	Enhancers	HepG2	liver
8	chr10:28653000-28655800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr10:28653200-28654200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr10:28653200-28654400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr10:28653200-28654600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr10:28653200-28656600	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr10:28653200-28656600	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr10:28653400-28654400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr10:28653400-28656200	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr10:28653400-28656800	Enhancers	Primary T cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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