Variant report

Variant	rs7076249
Chromosome Location	chr10:21780670-21780671
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:21779286..21780842-chr10:21820192..21822090,2	K562	blood:
2	chr10:21780122..21782297-chr10:21812714..21814674,2	K562	blood:
3	chr10:21777811..21781312-chr10:21782033..21784606,3	K562	blood:
4	chr10:21776431..21778896-chr10:21779857..21782810,2	MCF-7	breast:
5	chr10:21779256..21782718-chr10:21783660..21786597,3	MCF-7	breast:
6	chr10:21776929..21781312-chr10:21781870..21784606,5	K562	blood:
7	chr10:21777108..21778909-chr10:21778941..21781577,2	K562	blood:

Variant related genes	Relation type
ENSG00000204682	Chromatin interaction
ENSG00000222071	Chromatin interaction
ENSG00000180592	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11595807	1.00[CHB][hapmap];0.81[CHD][hapmap]
rs4083949	0.85[ASN][1000 genomes]
rs55974260	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61850016	0.93[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs6482180	1.00[CEU][hapmap]
rs68172811	0.95[ASN][1000 genomes]
rs7068359	1.00[CEU][hapmap]
rs72794828	0.95[ASN][1000 genomes]
rs73592575	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825284	chr10:21739527-21847437	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
2	nsv825285	chr10:21742026-21874334	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
3	nsv825286	chr10:21757784-21838890	Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
4	nsv825288	chr10:21759085-21831354	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
5	nsv825289	chr10:21762506-21845875	Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
6	nsv527055	chr10:21764019-21822856	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
7	nsv825290	chr10:21777857-21830878	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21763200-21782400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:21769200-21782800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:21769200-21782800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:21776400-21782800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr10:21777200-21782000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr10:21777600-21781600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr10:21778000-21783000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr10:21778000-21783200	Weak transcription	HepG2	liver
9	chr10:21778200-21781600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:21778200-21782600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr10:21778200-21782600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr10:21778200-21782800	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr10:21778200-21783000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr10:21778200-21783400	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr10:21778400-21782800	Weak transcription	Fetal Muscle Trunk	muscle
16	chr10:21778400-21782800	Weak transcription	Fetal Muscle Leg	muscle
17	chr10:21778400-21783200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr10:21778400-21783200	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr10:21778800-21781400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr10:21780400-21781400	Enhancers	A549	lung
21	chr10:21780400-21782600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr10:21780600-21783000	Weak transcription	Fetal Kidney	kidney

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