Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:21682158..21684428-chr10:21719134..21720875,2	K562	blood:
2	chr10:21719925..21723047-chr10:21821739..21824712,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000231553	Chromatin interaction
ENSG00000078403	Chromatin interaction

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11012697	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11012698	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11591285	1.00[ASN][1000 genomes]
rs11592821	0.88[ASN][1000 genomes]
rs11593346	0.88[ASN][1000 genomes]
rs11593992	0.88[ASN][1000 genomes]
rs11594786	0.85[ASN][1000 genomes]
rs11595095	0.88[ASN][1000 genomes]
rs11595127	0.91[ASN][1000 genomes]
rs11595687	1.00[ASN][1000 genomes]
rs11597809	0.86[ASN][1000 genomes]
rs12098603	0.89[ASN][1000 genomes]
rs12246522	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59897829	0.88[ASN][1000 genomes]
rs60417388	0.85[ASN][1000 genomes]
rs60438627	0.83[ASN][1000 genomes]
rs66585462	1.00[ASN][1000 genomes]
rs66850655	0.88[ASN][1000 genomes]
rs66880231	0.88[ASN][1000 genomes]
rs66906877	0.88[ASN][1000 genomes]
rs68153488	0.94[ASN][1000 genomes]
rs7076249	1.00[CEU][hapmap]
rs7912095	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv3439396	chr10:21718171-21720719	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21717200-21720800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr10:21717200-21721000	Weak transcription	NHEK	skin
3	chr10:21717200-21721400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr10:21717400-21720800	Weak transcription	HMEC	breast
5	chr10:21717400-21721600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:21718800-21721200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:21719000-21721200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr10:21720200-21722400	Enhancers	Placenta	Placenta

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