Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11012697	0.88[ASN][1000 genomes]
rs11012698	0.88[ASN][1000 genomes]
rs11591285	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11592821	0.83[ASN][1000 genomes]
rs11593992	0.83[ASN][1000 genomes]
rs11594786	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11595095	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11595127	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11595687	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11597809	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12098603	0.83[ASN][1000 genomes]
rs12246522	0.88[ASN][1000 genomes]
rs59897829	0.83[ASN][1000 genomes]
rs60417388	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs60438627	0.94[ASN][1000 genomes]
rs6482180	0.88[ASN][1000 genomes]
rs66491474	0.92[EUR][1000 genomes]
rs66585462	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66850655	0.83[ASN][1000 genomes]
rs66880231	0.83[ASN][1000 genomes]
rs66906877	0.83[ASN][1000 genomes]
rs68153488	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72794816	0.92[EUR][1000 genomes]
rs7912095	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21691600-21699200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:21695200-21698800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:21696800-21699400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:21697400-21698800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr10:21697600-21706200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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