Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:21691395..21694221-chr10:21715267..21716830,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11012697	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11012698	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11591285	0.94[ASN][1000 genomes]
rs11592821	0.83[ASN][1000 genomes]
rs11593346	0.88[ASN][1000 genomes]
rs11593992	0.83[ASN][1000 genomes]
rs11594786	0.80[ASN][1000 genomes]
rs11595095	0.88[ASN][1000 genomes]
rs11595127	0.91[ASN][1000 genomes]
rs11595687	0.94[ASN][1000 genomes]
rs11597809	0.86[ASN][1000 genomes]
rs12098603	0.94[ASN][1000 genomes]
rs12246522	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59897829	0.83[ASN][1000 genomes]
rs60417388	0.80[ASN][1000 genomes]
rs60438627	0.83[ASN][1000 genomes]
rs6482180	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66585462	0.94[ASN][1000 genomes]
rs66850655	0.83[ASN][1000 genomes]
rs66880231	0.83[ASN][1000 genomes]
rs66906877	0.83[ASN][1000 genomes]
rs68153488	0.88[ASN][1000 genomes]
rs7076249	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21707400-21716800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr10:21711200-21717600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr10:21715600-21717400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:21715600-21719000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:21716400-21717400	Enhancers	HMEC	breast
6	chr10:21716600-21717200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr10:21716600-21717200	Enhancers	A549	lung
8	chr10:21716600-21717200	Bivalent Enhancer	HepG2	liver
9	chr10:21716600-21717200	Enhancers	NHEK	skin

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