Variant report

Variant	rs7078904
Chromosome Location	chr10:23111920-23111921
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23108350..23110546-chr10:23110740..23113681,3	K562	blood:
2	chr10:23108350..23110476-chr10:23111720..23113681,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10764345	0.85[EUR][1000 genomes]
rs10828335	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10828336	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10828337	0.85[EUR][1000 genomes]
rs11013140	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1538887	0.83[EUR][1000 genomes]
rs1572850	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2222871	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4534468	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4748823	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6482239	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6482240	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7080378	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7083521	0.82[JPT][hapmap]
rs7085974	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7093389	0.86[EUR][1000 genomes]
rs7098985	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7894952	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7898655	0.80[EUR][1000 genomes]
rs7908924	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs875598	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs946961	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894960	chr10:23049139-23113841	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv894961	chr10:23049139-23128475	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv894962	chr10:23050683-23113841	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv894963	chr10:23050683-23121820	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv894964	chr10:23050683-23128475	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv894965	chr10:23071128-23113841	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv2764013	chr10:23087298-23239345	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv894966	chr10:23090535-23202522	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23100200-23114400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr10:23104800-23112800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr10:23106000-23113200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:23106400-23113200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr10:23106600-23112000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:23109800-23115200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr10:23110000-23114800	Enhancers	HUVEC	blood vessel
8	chr10:23110200-23113800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr10:23110200-23114200	Enhancers	NHDF-Ad	bronchial
10	chr10:23110200-23114600	Enhancers	NH-A	brain
11	chr10:23110800-23112600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr10:23110800-23113400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr10:23110800-23114000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr10:23111400-23112200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:23111400-23112800	Enhancers	Fetal Intestine Small	intestine
16	chr10:23111400-23114200	Enhancers	NHLF	lung
17	chr10:23111600-23112200	Enhancers	Stomach Mucosa	stomach
18	chr10:23111600-23112600	Enhancers	Fetal Intestine Large	intestine
19	chr10:23111600-23113200	Enhancers	NHEK	skin
20	chr10:23111600-23113800	Enhancers	Osteobl	bone
21	chr10:23111800-23112200	Enhancers	Fetal Kidney	kidney
22	chr10:23111800-23112200	Flanking Active TSS	A549	lung
23	chr10:23111800-23112400	Enhancers	HSMMtube	muscle
24	chr10:23111800-23112800	Enhancers	Hela-S3	cervix
25	chr10:23111800-23114400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr10:23111800-23114400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr10:23111800-23114600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr10:23111800-23114800	Enhancers	HepG2	liver
29	chr10:23111800-23114800	Enhancers	HSMM	muscle
30	chr10:23111800-23115200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr10:23111800-23115400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr10:23111800-23115400	Enhancers	HMEC	breast

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