Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10734042	0.80[AMR][1000 genomes]
rs10741009	0.82[AMR][1000 genomes]
rs10828335	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10828336	0.93[ASN][1000 genomes]
rs11013140	0.96[ASN][1000 genomes]
rs1572850	0.95[ASN][1000 genomes]
rs1890950	0.90[EUR][1000 genomes]
rs2222871	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4534468	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4748823	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6482239	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6482240	0.95[ASN][1000 genomes]
rs7068009	0.90[EUR][1000 genomes]
rs7078904	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7080378	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7083521	0.82[JPT][hapmap]
rs7084892	0.82[ASN][1000 genomes]
rs7098985	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7894952	0.95[ASN][1000 genomes]
rs7899129	0.80[AMR][1000 genomes]
rs7908924	0.88[ASN][1000 genomes]
rs875598	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs946961	0.95[ASN][1000 genomes]
rs9732534	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894961	chr10:23049139-23128475	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv894963	chr10:23050683-23121820	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv894964	chr10:23050683-23128475	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv2764013	chr10:23087298-23239345	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv894966	chr10:23090535-23202522	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23111800-23115400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr10:23111800-23115400	Enhancers	HMEC	breast
3	chr10:23112400-23120600	Weak transcription	HSMMtube	muscle
4	chr10:23113800-23116000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:23114000-23116200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr10:23114200-23115400	Enhancers	NHEK	skin
7	chr10:23114400-23115400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr10:23114400-23117400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr10:23114400-23117600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr10:23114600-23116000	Enhancers	K562	blood
11	chr10:23114600-23117200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr10:23114800-23117600	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr10:23114800-23118200	Weak transcription	HSMM	muscle
14	chr10:23115000-23115400	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr10:23115000-23120400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr10:23115000-23120400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr10:23115200-23117400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr10:23115200-23120400	Weak transcription	Esophagus	oesophagus

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