Variant report

Variant	rs7068009
Chromosome Location	chr10:23115009-23115010
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23112958..23115115-chr10:23343406..23346225,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10764345	0.97[ASN][1000 genomes]
rs10828337	0.88[ASN][1000 genomes]
rs10828342	0.90[ASN][1000 genomes]
rs10828343	0.90[ASN][1000 genomes]
rs11013139	0.85[ASN][1000 genomes]
rs11013141	0.85[ASN][1000 genomes]
rs11013146	0.93[ASN][1000 genomes]
rs11492538	0.91[ASN][1000 genomes]
rs1417374	0.83[ASN][1000 genomes]
rs1538887	0.90[ASN][1000 genomes]
rs1890950	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4534468	0.88[EUR][1000 genomes]
rs4747447	0.90[ASN][1000 genomes]
rs4748821	0.84[ASN][1000 genomes]
rs4748822	0.85[ASN][1000 genomes]
rs7085974	0.90[EUR][1000 genomes]
rs7093389	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73600525	0.86[ASN][1000 genomes]
rs7898655	0.89[ASN][1000 genomes]
rs9732527	0.90[ASN][1000 genomes]
rs9732534	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894961	chr10:23049139-23128475	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv894963	chr10:23050683-23121820	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv894964	chr10:23050683-23128475	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv2764013	chr10:23087298-23239345	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv894966	chr10:23090535-23202522	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23109800-23115200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr10:23111800-23115200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr10:23111800-23115400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr10:23111800-23115400	Enhancers	HMEC	breast
5	chr10:23112000-23115200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:23112400-23120600	Weak transcription	HSMMtube	muscle
7	chr10:23112600-23115200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr10:23112800-23115200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:23113800-23116000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr10:23114000-23116200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr10:23114200-23115400	Enhancers	NHEK	skin
12	chr10:23114400-23115400	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr10:23114400-23117400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr10:23114400-23117600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr10:23114600-23115200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr10:23114600-23116000	Enhancers	K562	blood
17	chr10:23114600-23117200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr10:23114800-23115200	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr10:23114800-23115200	Enhancers	Esophagus	oesophagus
20	chr10:23114800-23115200	Enhancers	GM12878-XiMat	blood
21	chr10:23114800-23115200	Active TSS	HepG2	liver
22	chr10:23114800-23117600	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr10:23114800-23118200	Weak transcription	HSMM	muscle
24	chr10:23115000-23115200	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr10:23115000-23115400	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr10:23115000-23120400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr10:23115000-23120400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links