Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10764345	0.89[ASN][1000 genomes]
rs10828337	0.85[ASN][1000 genomes]
rs10828343	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828351	0.85[AMR][1000 genomes]
rs11013139	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.90[ASN][1000 genomes]
rs11013141	0.90[ASN][1000 genomes]
rs11013146	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11013152	0.86[AMR][1000 genomes]
rs11492538	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11814688	0.81[EUR][1000 genomes]
rs1417374	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1538887	0.85[ASN][1000 genomes]
rs1890950	0.90[ASN][1000 genomes]
rs4747447	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4748821	0.89[ASN][1000 genomes]
rs4748822	1.00[CHB][hapmap];0.93[CHD][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs7068009	0.90[ASN][1000 genomes]
rs7084892	0.86[EUR][1000 genomes]
rs7093389	0.82[ASN][1000 genomes]
rs73600525	0.89[ASN][1000 genomes]
rs7475039	0.84[EUR][1000 genomes]
rs7898655	0.86[ASN][1000 genomes]
rs9732527	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9732534	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894961	chr10:23049139-23128475	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv894963	chr10:23050683-23121820	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv894964	chr10:23050683-23128475	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv2764013	chr10:23087298-23239345	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv894966	chr10:23090535-23202522	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10828342	PTF1A	cis	parietal	SCAN
rs10828342	MSRB2	cis	cerebellum	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23112400-23120600	Weak transcription	HSMMtube	muscle
2	chr10:23114800-23118200	Weak transcription	HSMM	muscle
3	chr10:23115000-23120400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:23115000-23120400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr10:23115200-23120400	Weak transcription	Esophagus	oesophagus
6	chr10:23116200-23120400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr10:23116800-23118000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:23117200-23118600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr10:23117400-23118400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr10:23117400-23119000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr10:23117600-23118400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr10:23117800-23118200	Weak transcription	Muscle Satellite Cultured Cells	--

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