Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10764345	0.90[ASN][1000 genomes]
rs10828337	0.86[ASN][1000 genomes]
rs10828342	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10828343	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10828351	0.85[AMR][1000 genomes]
rs11013139	0.91[ASN][1000 genomes]
rs11013141	0.91[ASN][1000 genomes]
rs11013146	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11013152	0.86[AMR][1000 genomes]
rs11814688	0.81[EUR][1000 genomes]
rs1417374	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1538887	0.86[ASN][1000 genomes]
rs1890950	0.91[ASN][1000 genomes]
rs4747447	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4748821	0.90[ASN][1000 genomes]
rs4748822	0.91[ASN][1000 genomes]
rs7068009	0.91[ASN][1000 genomes]
rs7084892	0.85[EUR][1000 genomes]
rs7093389	0.83[ASN][1000 genomes]
rs73600525	0.90[ASN][1000 genomes]
rs7475039	0.84[EUR][1000 genomes]
rs7898655	0.87[ASN][1000 genomes]
rs9732527	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9732534	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894961	chr10:23049139-23128475	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv894963	chr10:23050683-23121820	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv894964	chr10:23050683-23128475	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv2764013	chr10:23087298-23239345	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv894966	chr10:23090535-23202522	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23112400-23120600	Weak transcription	HSMMtube	muscle
2	chr10:23114400-23117400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr10:23114400-23117600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr10:23114600-23117200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:23114800-23117600	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr10:23114800-23118200	Weak transcription	HSMM	muscle
7	chr10:23115000-23120400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr10:23115000-23120400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr10:23115200-23117400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:23115200-23120400	Weak transcription	Esophagus	oesophagus
11	chr10:23116200-23120400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr10:23116800-23118000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search: