Variant report

Variant	rs7475039
Chromosome Location	chr10:23123231-23123232
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10734042	0.80[ASN][1000 genomes]
rs10741010	0.80[ASN][1000 genomes]
rs10764346	0.81[ASN][1000 genomes]
rs10828342	0.84[EUR][1000 genomes]
rs10828343	0.85[EUR][1000 genomes]
rs10828345	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10828346	0.82[ASN][1000 genomes]
rs10828348	0.81[ASN][1000 genomes]
rs11013146	0.83[EUR][1000 genomes]
rs11492538	0.84[EUR][1000 genomes]
rs11814688	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35687987	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4747447	0.85[EUR][1000 genomes]
rs4748823	0.86[JPT][hapmap]
rs67531879	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7084892	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7098985	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs7899129	0.80[ASN][1000 genomes]
rs9732527	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894961	chr10:23049139-23128475	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv894964	chr10:23050683-23128475	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv2764013	chr10:23087298-23239345	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv894966	chr10:23090535-23202522	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23120200-23124800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr10:23120400-23123400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr10:23120600-23124000	Enhancers	Brain Angular Gyrus	brain
4	chr10:23121000-23124400	Enhancers	Brain Substantia Nigra	brain
5	chr10:23121200-23124000	Enhancers	Fetal Intestine Small	intestine
6	chr10:23121600-23124400	Enhancers	Brain Hippocampus Middle	brain
7	chr10:23121800-23128600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr10:23122600-23123400	Enhancers	Fetal Lung	lung
9	chr10:23122600-23123600	Enhancers	Stomach Mucosa	stomach
10	chr10:23122600-23124200	Enhancers	Fetal Heart	heart
11	chr10:23122600-23131400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:23122800-23123800	Weak transcription	Brain Anterior Caudate	brain
13	chr10:23123000-23123800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr10:23123000-23124000	Weak transcription	Fetal Intestine Large	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links