Variant report

Variant	rs7899129
Chromosome Location	chr10:23129838-23129839
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10437409	0.83[EUR][1000 genomes]
rs10734042	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10741009	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10741010	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10741012	0.86[EUR][1000 genomes]
rs10764346	0.98[ASN][1000 genomes]
rs10764347	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10764351	0.85[EUR][1000 genomes]
rs10764353	0.86[EUR][1000 genomes]
rs10764354	0.86[EUR][1000 genomes]
rs10764361	0.86[EUR][1000 genomes]
rs10764362	0.85[EUR][1000 genomes]
rs10828345	0.96[ASN][1000 genomes]
rs10828346	0.98[ASN][1000 genomes]
rs10828348	0.95[ASN][1000 genomes]
rs10828349	0.80[EUR][1000 genomes]
rs10828359	0.86[EUR][1000 genomes]
rs10828362	0.85[EUR][1000 genomes]
rs10828364	0.82[EUR][1000 genomes]
rs10828368	0.85[EUR][1000 genomes]
rs11013151	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11013168	0.86[EUR][1000 genomes]
rs11814688	0.82[ASN][1000 genomes]
rs12241713	0.86[EUR][1000 genomes]
rs12262044	0.86[EUR][1000 genomes]
rs12355848	0.86[EUR][1000 genomes]
rs1578343	0.86[EUR][1000 genomes]
rs2105270	0.86[EUR][1000 genomes]
rs2886153	0.86[EUR][1000 genomes]
rs35687987	0.80[ASN][1000 genomes]
rs4534468	0.83[AMR][1000 genomes]
rs4748823	0.82[JPT][hapmap];0.83[MEX][hapmap]
rs4748829	0.86[EUR][1000 genomes]
rs67531879	0.82[ASN][1000 genomes]
rs7085974	0.80[AMR][1000 genomes]
rs7475039	0.80[ASN][1000 genomes]
rs7899968	0.86[EUR][1000 genomes]
rs7903292	0.98[ASN][1000 genomes]
rs9988672	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2764013	chr10:23087298-23239345	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv894966	chr10:23090535-23202522	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23122600-23131400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:23124000-23135000	Weak transcription	Brain Angular Gyrus	brain
3	chr10:23125400-23135000	Weak transcription	Brain Hippocampus Middle	brain
4	chr10:23126600-23137600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr10:23129000-23131000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr10:23129000-23133800	Weak transcription	Aorta	Aorta
7	chr10:23129200-23131000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr10:23129200-23131200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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