Variant report

Variant	rs11013168
Chromosome Location	chr10:23164291-23164292
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10734042	0.86[EUR][1000 genomes]
rs10741009	0.83[EUR][1000 genomes]
rs10741010	0.84[EUR][1000 genomes]
rs10741012	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10764347	1.00[EUR][1000 genomes]
rs10764351	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10764353	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10764354	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10764355	0.94[ASN][1000 genomes]
rs10764356	0.94[ASN][1000 genomes]
rs10764357	0.90[ASN][1000 genomes]
rs10764358	0.94[ASN][1000 genomes]
rs10764361	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10764362	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10828350	0.90[EUR][1000 genomes]
rs10828359	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10828362	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10828363	0.90[ASN][1000 genomes]
rs10828364	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10828367	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10828368	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11013151	0.82[EUR][1000 genomes]
rs12241713	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12262044	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12355848	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1578343	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2105270	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2886153	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4748829	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7899129	0.86[EUR][1000 genomes]
rs7899968	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9988672	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2764013	chr10:23087298-23239345	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv894966	chr10:23090535-23202522	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23160800-23165000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:23161400-23165400	Enhancers	Brain Substantia Nigra	brain
3	chr10:23161600-23165000	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr10:23162200-23164800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:23162400-23167400	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr10:23162600-23164600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr10:23162600-23164800	Enhancers	H9 Cell Line	embryonic stem cell
8	chr10:23162600-23165400	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr10:23162800-23164400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr10:23162800-23166000	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr10:23162800-23166400	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr10:23163200-23164600	Weak transcription	Brain Angular Gyrus	brain
13	chr10:23163200-23165800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr10:23163400-23165200	Enhancers	Brain Hippocampus Middle	brain
15	chr10:23163400-23166200	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr10:23163400-23166200	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr10:23163400-23169600	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr10:23163600-23164600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr10:23163600-23164800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr10:23163800-23165200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
21	chr10:23164000-23164800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr10:23164200-23164600	Enhancers	Brain Cingulate Gyrus	brain

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