Variant report

Variant	rs10828350
Chromosome Location	chr10:23140318-23140319
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10437409	0.89[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10741012	0.90[EUR][1000 genomes]
rs10764347	0.90[EUR][1000 genomes]
rs10764351	0.88[EUR][1000 genomes]
rs10764353	0.90[EUR][1000 genomes]
rs10764354	0.90[EUR][1000 genomes]
rs10764361	0.90[EUR][1000 genomes]
rs10764362	0.90[EUR][1000 genomes]
rs10764366	0.83[CEU][hapmap]
rs10764367	0.83[CEU][hapmap]
rs10828349	0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10828351	0.98[ASN][1000 genomes]
rs10828359	0.90[EUR][1000 genomes]
rs10828362	0.88[EUR][1000 genomes]
rs10828364	0.85[EUR][1000 genomes]
rs10828367	0.82[EUR][1000 genomes]
rs10828368	0.89[EUR][1000 genomes]
rs10828377	0.87[CEU][hapmap]
rs10828378	0.87[CEU][hapmap]
rs10828379	0.87[CEU][hapmap]
rs10828380	0.87[CEU][hapmap]
rs11013139	0.92[CHB][hapmap];0.85[JPT][hapmap];0.90[MEX][hapmap]
rs11013152	0.98[ASN][1000 genomes]
rs11013168	0.90[EUR][1000 genomes]
rs12241713	0.90[EUR][1000 genomes]
rs12262044	0.90[EUR][1000 genomes]
rs12355848	0.90[EUR][1000 genomes]
rs1417374	0.88[ASN][1000 genomes]
rs1417376	0.81[ASN][1000 genomes]
rs1578343	0.90[EUR][1000 genomes]
rs2105270	0.90[EUR][1000 genomes]
rs2886153	0.90[EUR][1000 genomes]
rs2995679	0.87[CEU][hapmap]
rs4748822	0.92[CHB][hapmap]
rs4748829	0.90[EUR][1000 genomes]
rs56284174	0.81[ASN][1000 genomes]
rs7098947	0.83[JPT][hapmap]
rs7899968	0.90[EUR][1000 genomes]
rs9665603	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2764013	chr10:23087298-23239345	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv894966	chr10:23090535-23202522	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23136200-23140400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr10:23137000-23140400	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr10:23137000-23140600	Enhancers	Brain Cingulate Gyrus	brain
4	chr10:23137600-23140800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
5	chr10:23138200-23142000	Weak transcription	Gastric	stomach
6	chr10:23138400-23140600	Enhancers	Brain Angular Gyrus	brain
7	chr10:23138400-23140600	Enhancers	Brain Substantia Nigra	brain
8	chr10:23138400-23141800	Weak transcription	Spleen	Spleen
9	chr10:23138600-23141000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:23138600-23141800	Weak transcription	Ovary	ovary
11	chr10:23138600-23144200	Weak transcription	Right Ventricle	heart
12	chr10:23138800-23140800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr10:23138800-23142400	Weak transcription	HSMMtube	muscle
14	chr10:23138800-23143000	Weak transcription	Osteobl	bone
15	chr10:23139000-23141200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr10:23139000-23142000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr10:23139000-23142200	Enhancers	Brain Hippocampus Middle	brain
18	chr10:23139000-23142600	Enhancers	Brain Anterior Caudate	brain
19	chr10:23139000-23143600	Weak transcription	Fetal Heart	heart
20	chr10:23139000-23144200	Weak transcription	Primary hematopoietic stem cells	blood
21	chr10:23139200-23141800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr10:23139800-23140400	Weak transcription	HepG2	liver
23	chr10:23139800-23142000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr10:23139800-23142000	Weak transcription	Right Atrium	heart
25	chr10:23139800-23143000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr10:23139800-23144200	Weak transcription	Left Ventricle	heart
27	chr10:23140000-23140400	Weak transcription	HSMM	muscle
28	chr10:23140000-23143800	Weak transcription	Aorta	Aorta
29	chr10:23140200-23142000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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