Variant report
| Variant | rs10828377 |
|---|---|
| Chromosome Location | chr10:23228852-23228853 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:23228453..23231060-chr10:23236820..23238602,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs10508656 | 1.00[CHB][hapmap] |
| rs10764366 | 0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap] |
| rs10764367 | 0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap] |
| rs10828378 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap] |
| rs10828379 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[YRI][hapmap] |
| rs10828380 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap] |
| rs10828381 | 1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap] |
| rs10828382 | 1.00[CHB][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10828389 | 0.82[CHB][hapmap] |
| rs10828392 | 1.00[CHB][hapmap] |
| rs10828395 | 1.00[CHB][hapmap] |
| rs11013206 | 0.83[ASN][1000 genomes] |
| rs11013210 | 1.00[CHB][hapmap];0.83[ASN][1000 genomes] |
| rs11013225 | 1.00[CHB][hapmap] |
| rs11013234 | 1.00[CHB][hapmap] |
| rs1148301 | 0.87[CEU][hapmap] |
| rs11511183 | 1.00[CHB][hapmap] |
| rs12252340 | 1.00[CHB][hapmap] |
| rs12355471 | 1.00[CHB][hapmap] |
| rs17440393 | 1.00[CHB][hapmap] |
| rs1987026 | 1.00[CHB][hapmap] |
| rs2100968 | 1.00[CHB][hapmap];0.86[JPT][hapmap] |
| rs2995679 | 1.00[CEU][hapmap] |
| rs55706023 | 0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs6482246 | 1.00[CHB][hapmap] |
| rs7077613 | 1.00[CHB][hapmap] |
| rs7084413 | 1.00[CHB][hapmap] |
| rs7087200 | 1.00[CHB][hapmap] |
| rs7087818 | 0.82[CHB][hapmap] |
| rs7099925 | 1.00[CHB][hapmap] |
| rs7100499 | 1.00[CHB][hapmap] |
| rs7907625 | 1.00[CHB][hapmap];0.80[JPT][hapmap] |
| rs7911289 | 1.00[CHB][hapmap] |
| rs9665603 | 0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2764013 | chr10:23087298-23239345 | Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
