Variant report

Variant	rs9665603
Chromosome Location	chr10:23230465-23230466
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23228453..23231060-chr10:23236820..23238602,3	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10508656	1.00[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs10764366	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs10764367	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs10828377	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs10828378	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs10828379	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.92[MEX][hapmap];0.93[TSI][hapmap]
rs10828380	0.95[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs10828381	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10828382	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.89[JPT][hapmap];0.90[TSI][hapmap];0.98[ASN][1000 genomes]
rs10828389	0.82[CHB][hapmap];0.96[CHD][hapmap];0.81[ASN][1000 genomes]
rs10828390	0.81[ASN][1000 genomes]
rs10828392	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs10828395	1.00[CHB][hapmap]
rs11013206	0.95[ASN][1000 genomes]
rs11013210	1.00[CHB][hapmap];0.96[CHD][hapmap];0.89[JPT][hapmap];0.95[ASN][1000 genomes]
rs11013225	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs11013234	1.00[CHB][hapmap]
rs1148301	0.91[CEU][hapmap];0.92[TSI][hapmap]
rs11511183	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs12252340	1.00[CHB][hapmap]
rs12355471	1.00[CHB][hapmap]
rs12359749	0.85[ASN][1000 genomes]
rs17440393	1.00[CHB][hapmap];0.96[CHD][hapmap];0.89[JPT][hapmap]
rs1987026	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs2100968	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2995679	0.95[CEU][hapmap];0.86[YRI][hapmap]
rs35373354	0.83[ASN][1000 genomes]
rs55706023	0.96[ASN][1000 genomes]
rs55727318	0.85[ASN][1000 genomes]
rs6482246	1.00[CHB][hapmap]
rs7077613	1.00[CHB][hapmap];0.92[CHD][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs7083053	0.85[ASN][1000 genomes]
rs7083069	0.85[ASN][1000 genomes]
rs7084413	1.00[CHB][hapmap];0.96[CHD][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs7087200	1.00[CHB][hapmap]
rs7087818	0.82[CHB][hapmap]
rs7098947	0.81[JPT][hapmap]
rs7099925	1.00[CHB][hapmap]
rs7100499	1.00[CHB][hapmap]
rs7895048	0.83[ASN][1000 genomes]
rs7907625	1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs7911289	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2764013	chr10:23087298-23239345	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9665603	PIP4K2A	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links