Variant report

Variant	rs6482246
Chromosome Location	chr10:23301021-23301022
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:23293236..23296028-chr10:23300295..23302745,2	MCF-7	breast:
2	chr10:23297640..23302791-chr10:23338306..23344811,10	K562	blood:
3	chr10:23298223..23301629-chr10:23333237..23336765,3	K562	blood:

Variant related genes	Relation type
ENSG00000165309	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10508656	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs10764366	1.00[CHB][hapmap]
rs10764367	1.00[CHB][hapmap]
rs10828377	1.00[CHB][hapmap]
rs10828378	1.00[CHB][hapmap]
rs10828379	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs10828380	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs10828381	1.00[CHB][hapmap]
rs10828382	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs10828389	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs10828390	0.86[JPT][hapmap];0.82[AMR][1000 genomes]
rs10828392	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10828395	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs11013210	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs11013225	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11013234	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11511183	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs12252340	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12355471	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17440393	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs1987026	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2100968	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs34262913	0.86[ASN][1000 genomes]
rs7077613	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs7084413	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs7087200	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7087818	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7099925	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7100499	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7907625	1.00[CHB][hapmap]
rs7911289	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9665603	1.00[CHB][hapmap]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23300000-23303800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr10:23300400-23301400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr10:23300400-23303400	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr10:23300800-23302200	Weak transcription	Brain Hippocampus Middle	brain
5	chr10:23301000-23301200	Enhancers	Brain Cingulate Gyrus	brain
6	chr10:23301000-23303000	Weak transcription	Brain Substantia Nigra	brain

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