Variant report

Variant	rs10828389
Chromosome Location	chr10:23278047-23278048
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:23277498..23278226-chr10:23324256..23324933,3	MCF-7	breast:
2	chr10:22873750..22875959-chr10:23275797..23278761,2	MCF-7	breast:
3	chr10:22862423..22863518-chr10:23277420..23278159,3	MCF-7	breast:
4	chr10:23277724..23278492-chr10:23356642..23357454,3	MCF-7	breast:
5	chr10:23277758..23279435-chr10:23283793..23286057,2	K562	blood:
6	chr10:23276691..23280787-chr10:23341219..23344727,5	K562	blood:
7	chr10:23276400..23278093-chr10:23282051..23283744,2	K562	blood:
8	chr10:22862942..22863550-chr10:23276977..23278428,4	K562	blood:
9	chr10:22905144..22905768-chr10:23278000..23278549,2	K562	blood:
10	chr10:23277589..23278680-chr10:23356670..23357591,3	K562	blood:
11	chr10:23277505..23278426-chr10:23356864..23357372,2	MCF-7	breast:
12	chr10:22299830..22300473-chr10:23277888..23278467,2	K562	blood:
13	chr10:23276792..23280787-chr10:23340649..23346324,8	K562	blood:
14	chr10:23273401..23275835-chr10:23276935..23280028,3	K562	blood:

No data

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10508656	0.82[CHB][hapmap];0.88[JPT][hapmap];0.95[ASN][1000 genomes]
rs10764366	0.82[CHB][hapmap];0.96[CHD][hapmap]
rs10764367	0.82[CHB][hapmap];0.96[CHD][hapmap]
rs10828377	0.82[CHB][hapmap]
rs10828378	0.82[CHB][hapmap]
rs10828379	0.82[CHB][hapmap];0.96[CHD][hapmap];0.88[JPT][hapmap]
rs10828380	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs10828381	0.82[CHB][hapmap]
rs10828382	0.82[CHB][hapmap];0.96[CHD][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs10828390	0.86[JPT][hapmap];0.96[ASN][1000 genomes]
rs10828392	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11013206	0.86[ASN][1000 genomes]
rs11013210	0.82[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs11013225	0.82[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11013234	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs11511183	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs12252340	0.82[CHB][hapmap]
rs12355471	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs12359749	0.96[ASN][1000 genomes]
rs17440393	0.82[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap]
rs1987026	0.82[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2100968	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs2364844	0.87[ASN][1000 genomes]
rs2927925	0.81[CEU][hapmap]
rs35373354	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55706023	0.84[ASN][1000 genomes]
rs55727318	0.96[ASN][1000 genomes]
rs6482246	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs7077613	0.82[CHB][hapmap];0.96[CHD][hapmap];0.88[JPT][hapmap];0.96[ASN][1000 genomes]
rs7083053	0.96[ASN][1000 genomes]
rs7083069	0.96[ASN][1000 genomes]
rs7084413	0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7087200	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs7087818	1.00[JPT][hapmap]
rs7099925	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs7100499	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs7895048	0.95[ASN][1000 genomes]
rs7907625	0.82[CHB][hapmap];0.96[ASN][1000 genomes]
rs7911289	0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9665603	0.82[CHB][hapmap];0.96[CHD][hapmap]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23277200-23278200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr10:23277600-23278200	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr10:23277600-23278200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr10:23277600-23278200	Enhancers	Fetal Kidney	kidney
5	chr10:23277600-23278200	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr10:23277600-23278400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr10:23277600-23278400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr10:23277800-23278200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr10:23277800-23278200	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr10:23277800-23278200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr10:23277800-23278200	Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr10:23277800-23278200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr10:23277800-23278200	Enhancers	Colon Smooth Muscle	Colon
14	chr10:23277800-23278200	Flanking Active TSS	K562	blood
15	chr10:23277800-23278400	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr10:23277800-23278400	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr10:23277800-23278400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr10:23278000-23278200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr10:23278000-23278200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr10:23278000-23278200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr10:23278000-23278400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr10:23278000-23278400	Enhancers	Brain Hippocampus Middle	brain
23	chr10:23278000-23278400	Active TSS	A549	lung
24	chr10:23278000-23280600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr10:23278000-23280800	Weak transcription	Liver	Liver
26	chr10:23278000-23281000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr10:23278000-23281800	Weak transcription	Skeletal Muscle Male	skeletal muscle

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