Variant report

Variant	rs10828382
Chromosome Location	chr10:23247377-23247378
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10508656	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10764366	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.89[JPT][hapmap];0.90[TSI][hapmap]
rs10764367	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.89[JPT][hapmap];0.90[TSI][hapmap]
rs10828377	1.00[CHB][hapmap];0.94[YRI][hapmap]
rs10828378	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs10828379	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.85[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap]
rs10828380	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10828381	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.94[YRI][hapmap]
rs10828389	0.82[CHB][hapmap];0.96[CHD][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs10828390	0.83[ASN][1000 genomes]
rs10828392	1.00[CHB][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs10828395	1.00[CHB][hapmap]
rs11013206	0.96[ASN][1000 genomes]
rs11013210	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11013225	1.00[CHB][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs11013234	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs1148301	0.92[TSI][hapmap]
rs11511183	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12252340	1.00[CHB][hapmap]
rs12355471	1.00[CHB][hapmap]
rs12359749	0.86[ASN][1000 genomes]
rs17440393	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap]
rs1987026	1.00[CHB][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs2100968	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs35373354	0.84[ASN][1000 genomes]
rs55706023	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55727318	0.86[ASN][1000 genomes]
rs6482246	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs7077613	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7083053	0.86[ASN][1000 genomes]
rs7083069	0.86[ASN][1000 genomes]
rs7084413	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7087200	1.00[CHB][hapmap]
rs7087818	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs7099925	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs7100499	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs7895048	0.84[ASN][1000 genomes]
rs7907625	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs7911289	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs9665603	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.89[JPT][hapmap];0.90[TSI][hapmap]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23246400-23249000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:23247000-23247600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:23247000-23247600	Enhancers	Muscle Satellite Cultured Cells	--
4	chr10:23247200-23247600	Enhancers	HMEC	breast

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