Variant report

Variant	rs1987026
Chromosome Location	chr10:23281634-23281635
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA2	chr10:23281520-23281801	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:23281631..23284076-chr10:23292100..23294027,2	K562	blood:
2	chr10:23280070..23282085-chr10:23284416..23286458,2	MCF-7	breast:
3	chr10:23002239..23004052-chr10:23280214..23282758,2	MCF-7	breast:

Variant related genes	Relation type
RNA5SP304	TF binding region
ENSG00000223131	Chromatin interaction
ENSG00000150867	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10508656	0.94[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10764366	1.00[CHB][hapmap]
rs10764367	1.00[CHB][hapmap]
rs10828377	1.00[CHB][hapmap]
rs10828378	1.00[CHB][hapmap]
rs10828379	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs10828380	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs10828381	1.00[CHB][hapmap]
rs10828382	1.00[CHB][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs10828389	0.82[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10828390	0.86[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828392	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828395	0.89[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];0.89[MEX][hapmap]
rs11013206	0.86[ASN][1000 genomes]
rs11013210	1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs11013225	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013232	0.94[EUR][1000 genomes]
rs11013234	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11511183	0.89[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs12252340	0.83[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap]
rs12355471	0.83[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs12359749	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17440393	0.89[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs2100968	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs2364844	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35373354	0.95[ASN][1000 genomes]
rs55706023	0.84[ASN][1000 genomes]
rs55727318	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6482246	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7077613	0.94[CEU][hapmap];1.00[CHB][hapmap];0.96[GIH][hapmap];0.88[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7083053	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7083069	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7084413	1.00[CHB][hapmap];0.88[JPT][hapmap];0.95[ASN][1000 genomes]
rs7087200	0.82[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs7087818	0.83[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs7099925	0.83[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap]
rs7100499	0.83[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap]
rs7895048	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7907625	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7911289	0.83[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9665603	1.00[CHB][hapmap]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23278000-23281800	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr10:23278200-23282600	Weak transcription	Fetal Kidney	kidney
3	chr10:23280800-23282200	Enhancers	Liver	Liver
4	chr10:23281000-23281800	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr10:23281000-23281800	Enhancers	HepG2	liver
6	chr10:23281200-23282600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr10:23281600-23282000	Bivalent Enhancer	Fetal Lung	lung
8	chr10:23281600-23282200	Enhancers	Pancreas	Pancrea

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