Variant report

Variant	rs12355471
Chromosome Location	chr10:23305193-23305194
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:23287418..23289094-chr10:23304568..23306972,2	K562	blood:
2	chr10:23303236..23310250-chr10:23341340..23346193,13	K562	blood:
3	chr10:23304838..23306425-chr10:23312487..23315247,2	K562	blood:
4	chr10:23302995..23309769-chr10:23341340..23346193,8	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10508656	1.00[CHB][hapmap]
rs10764366	1.00[CHB][hapmap]
rs10764367	1.00[CHB][hapmap]
rs10828377	1.00[CHB][hapmap]
rs10828378	1.00[CHB][hapmap]
rs10828379	1.00[CHB][hapmap]
rs10828380	1.00[CHB][hapmap]
rs10828381	1.00[CHB][hapmap]
rs10828382	1.00[CHB][hapmap]
rs10828389	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs10828390	0.86[JPT][hapmap]
rs10828392	0.83[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs10828395	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs11013210	1.00[CHB][hapmap]
rs11013225	0.83[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.81[AMR][1000 genomes]
rs11013234	0.94[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs11511183	1.00[CHB][hapmap]
rs12252340	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17440393	1.00[CHB][hapmap]
rs1987026	0.83[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs2100968	1.00[CHB][hapmap]
rs34262913	0.92[ASN][1000 genomes]
rs55727318	0.82[AMR][1000 genomes]
rs6482246	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7077613	1.00[CHB][hapmap]
rs7084413	1.00[CHB][hapmap]
rs7087200	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7087818	1.00[CEU][hapmap];0.82[CHB][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7099925	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7100499	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7907625	1.00[CHB][hapmap]
rs7911289	0.88[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs9665603	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975810	chr10:23302287-23306366	Weak transcription Flanking Active TSS Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23301400-23311200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr10:23304000-23305400	Enhancers	K562	blood
3	chr10:23304600-23305400	Enhancers	GM12878-XiMat	blood

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