Variant report

Variant	rs7077613
Chromosome Location	chr10:23269832-23269833
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23268197..23270215-chr10:23343251..23346098,3	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10508656	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10764366	1.00[CHB][hapmap];0.92[CHD][hapmap];0.89[JPT][hapmap]
rs10764367	1.00[CHB][hapmap];0.92[CHD][hapmap];0.89[JPT][hapmap]
rs10828377	1.00[CHB][hapmap]
rs10828378	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs10828379	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap]
rs10828380	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10828381	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs10828382	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10828389	0.82[CHB][hapmap];0.96[CHD][hapmap];0.88[JPT][hapmap];0.96[ASN][1000 genomes]
rs10828390	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10828392	0.94[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10828395	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs11013206	0.89[ASN][1000 genomes]
rs11013210	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11013225	0.94[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];0.88[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11013232	0.89[EUR][1000 genomes]
rs11013234	0.84[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs11511183	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12252340	1.00[CHB][hapmap]
rs12355471	1.00[CHB][hapmap]
rs12359749	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17440393	0.83[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap]
rs1987026	0.94[CEU][hapmap];1.00[CHB][hapmap];0.96[GIH][hapmap];0.88[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2100968	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs2364844	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35373354	0.98[ASN][1000 genomes]
rs55706023	0.88[ASN][1000 genomes]
rs55727318	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482246	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs7083053	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7083069	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7084413	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7087200	1.00[CHB][hapmap]
rs7087818	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs7099925	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs7100499	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs7895048	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7907625	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7911289	1.00[CHB][hapmap];0.89[GIH][hapmap];0.88[JPT][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9665603	1.00[CHB][hapmap];0.92[CHD][hapmap];0.89[JPT][hapmap]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23265000-23277600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:23268000-23270200	Weak transcription	Brain Angular Gyrus	brain
3	chr10:23268000-23270400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr10:23268000-23274200	Weak transcription	Brain Hippocampus Middle	brain
5	chr10:23268200-23270200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr10:23268200-23270200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr10:23268200-23270600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr10:23268200-23272600	Weak transcription	Brain Substantia Nigra	brain
9	chr10:23268200-23277800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr10:23268600-23270200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr10:23269800-23270000	Enhancers	Brain Anterior Caudate	brain
12	chr10:23269800-23270400	Enhancers	Liver	Liver

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