Variant report

Variant	rs10828392
Chromosome Location	chr10:23283308-23283309
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:23281631..23284076-chr10:23292100..23294027,2	K562	blood:
2	chr10:23281876..23284605-chr10:23287991..23291315,3	K562	blood:
3	chr10:23282511..23285269-chr10:23340360..23342664,2	K562	blood:
4	chr10:23276400..23278093-chr10:23282051..23283744,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10508656	0.94[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10764366	1.00[CHB][hapmap]
rs10764367	1.00[CHB][hapmap]
rs10828377	1.00[CHB][hapmap]
rs10828378	1.00[CHB][hapmap]
rs10828379	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs10828380	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs10828381	1.00[CHB][hapmap]
rs10828382	1.00[CHB][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs10828389	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10828390	1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828395	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs11013206	0.86[ASN][1000 genomes]
rs11013210	1.00[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs11013225	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013232	0.94[EUR][1000 genomes]
rs11013234	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11511183	0.94[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs12252340	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs12355471	0.83[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs12359749	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17440393	0.94[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap]
rs1987026	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2100968	1.00[CHB][hapmap]
rs2364844	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35373354	0.95[ASN][1000 genomes]
rs55706023	0.84[ASN][1000 genomes]
rs55727318	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6482246	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7077613	0.94[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7083053	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7083069	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7084413	1.00[CHB][hapmap];0.84[JPT][hapmap];0.95[ASN][1000 genomes]
rs7087200	0.82[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap]
rs7087818	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs7099925	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7100499	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7895048	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7907625	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7911289	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9665603	1.00[CHB][hapmap]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23282800-23294200	Weak transcription	Pancreas	Pancrea

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